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[ Bron: stringtie ]
Pakket: stringtie (2.1.1+ds-2)
Verwijzigingen voor stringtie
Trisquel bronnen:
Het bronpakket stringtie downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Steffen Moeller
Externe bronnen:
- Homepage [ccb.jhu.edu]
Vergelijkbare pakketten:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Andere aan stringtie gerelateerde pakketten
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
-
- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime