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[ 原始碼： stringtie ]
套件： stringtie (2.1.1+ds-2)
stringtie 的相關超連結
Trisquel 的資源：
下載原始碼套件 stringtie：
維護者：
Original Maintainers:
- Debian Med Packaging Team (郵件存檔)
- Steffen Moeller
外部的資源：
- 主頁 [ccb.jhu.edu]
相似套件：
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
其他與 stringtie 有關的套件
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件提供： libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime