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[ ソース: stringtie ]
パッケージ: stringtie (2.1.1+ds-2)
stringtie に関するリンク
Trisquel の資源:
stringtie ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Steffen Moeller
外部の資源:
- ホームページ [ccb.jhu.edu]
類似のパッケージ:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
その他の stringtie 関連パッケージ
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
-
- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime