Skip to content
Sections
>> Trisquel >> Pakketten >> nabia >> science

Softwarepakketten in "nabia", Subsectie science

3depict (0.0.22-1.2build1)
visualisation and analysis for single valued point data
abacas (1.3.1-6)
close gaps in genomic alignments from short reads
acedb-other (4.9.39+dfsg.02-4build1)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.02-4build1)
transitional package for belvu
acedb-other-belvu
virtueel pakket geboden door belvu
acedb-other-dotter (4.9.39+dfsg.02-4build1)
transitional package for dotter
acedb-other-dotter
virtueel pakket geboden door dotter
aces3 (3.0.8-6build1)
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-6build1)
Advanced Concepts in Electronic Structure III
achilles (2-9build1)
Artificial life and evolution simulator
adapterremoval (2.3.1-3build1)
rapid adapter trimming, identification, and read merging of gene sequences
adapterremoval-examples (2.3.1-3build1)
rapid adapter trimming, identification, and read merging (example data)
adms (2.3.6-2)
Automatic device model synthesizer for Verilog-AMS
adun-core (0.81-13build1)
Molecular Simulator
adun.app (0.81-13build1)
Molecular Simulator for GNUstep (GUI)
aegean (0.16.0+dfsg-2)
integrated genome analysis toolkit
aeskulap (0.2.2-beta2+git20190406.ef77f01-1build1)
medical image viewer and DICOM network client
aevol (5.0+ds-1build1)
digital genetics model to run Evolution Experiments in silico
aghermann (1.1.2-3build1)
Sleep-research experiment manager
aladin (10.076+dfsg-1)
Interactive sky atlas for astronomical images and datasets
alfa (1.0-3build2)
Automated Line Fitting Algorithm
algotutor (0.8.6-3)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-7)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-9)
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-9)
example files for ALTree
amap-align (2.2+git20080214.600fc29+dfsg-1build1)
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-8)
removal of noise from 454 sequenced PCR amplicons
andi (0.12-4build1)
Efficient Estimation of Evolutionary Distances
anfo (0.98-7build2)
Short Read Aligner/Mapper from MPG
aoflagger (2.14.0-2ubuntu2)
Find RFI in radio astronomical observations
apbs (1.4-1ubuntu1)
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.3.0-1)
Transitional dummy package for apertium-afr-nld
apertium-afr-nld (0.3.0-1)
Apertium translation data for the Afrikaans-Dutch pair
apertium-anaphora (0.0.4-1build1)
Anaphora resolution module
apertium-apy (0.11.5-1)
Apertium APY service
apertium-arg (0.1.2~r65494-2)
Apertium single language data for Aragonese
apertium-bel (0.1.0~r81357-2)
Apertium single language data for Belarusian
apertium-bel-rus (0.2.1-1)
Apertium translation data for the Belarusian-Russian pair
apertium-br-fr (0.5.0~r61325-4)
Apertium linguistic data to translate between Breton and French
apertium-ca-it (0.1.1~r57554-2)
Apertium translation data for the Catalan-Italian pair
apertium-crh (0.2.0~r83161-2)
Apertium single language data for Crimean Tatar
apertium-crh-tur (0.3.0~r83159-2)
Apertium translation data for the Crimean Tatar-Turkish pair
apertium-cy-en (0.1.1~r57554-5)
Apertium translation data for the Welsh-English pair
apertium-dan (0.6.0-2)
Apertium single language data for Danish
apertium-dan-nor (1.4.1-1)
Apertium translation data for the Danish-Norwegian pair
apertium-dev (3.6.1-1build2)
Development tools and library for Apertium
apertium-en-gl (0.5.2~r57551-3)
Apertium translation data for the English-Galician pair
apertium-eng-cat (1.0.1-1)
Apertium translation data for the English-Catalan pair
apertium-eo-en (1.0.0~r63833-3)
Apertium linguistic data to translate between Esperanto and English
apertium-eo-fr (0.9.0~r57551-3)
Apertium translation data for the Esperanto-French pair
apertium-es-ast (1.1.0~r51165-3)
Apertium translation data for the Spanish-Asturian pair
apertium-es-it (0.2.0~r78826-2)
Transitional dummy package for apertium-spa-ita
apertium-eu-en (0.3.1~r56205-3)
Apertium translation data for the Basque-English pair
apertium-eval-translator (1.2.1-2)
Evaluate machine translation output against reference
apertium-fra (1.5.0-1)
Apertium single language data for French
apertium-fra-cat (1.7.0-1)
Apertium translation data for the French-Catalan pair
apertium-hbs (0.5.0~r68212-3)
Apertium single language data for Serbo-Croatian
apertium-hbs-eng (0.1.0~r57598-2)
Apertium translation data for the Serbo-Croatian - English pair
apertium-hbs-mkd (0.1.0~r76450-4)
Apertium translation data for the Serbo-Croatian-Macedonian pair
apertium-hbs-slv (0.1.0~r59294-2)
Apertium translation data for the Serbo-Croatian-Slovenian pair
apertium-hin (0.1.0~r59158-2)
Apertium single language data for Hindi
apertium-id-ms (0.1.1~r57551-2)
Apertium translation data for the Indonesian-Malay pair
apertium-is-sv (0.1.0~r76450-3)
Apertium translation data for the Icelandic-Swedish pair
apertium-isl (0.1.0~r65494-2)
Apertium single language data for Icelandic
apertium-isl-eng (0.1.0~r66083-3)
Apertium translation data for the Icelandic-English pair
apertium-ita (0.10.0~r82237-2)
Apertium single language data for Italian
apertium-kaz (0.1.0~r61338-2)
Apertium single language data for Kazakh
apertium-kaz-tat (0.2.1~r57554-2)
Apertium translation data for the Kazakh-Tatar pair
apertium-lex-tools (0.2.3-1build2)
Constraint-based lexical selection module
apertium-mk-bg (0.2.0~r49489-3)
Apertium translation data for the Macedonian-Bulgarian pair
apertium-mk-en (0.1.1~r57554-3)
Apertium translation data for the Macedonian-English pair
apertium-mlt-ara (0.2.0~r62623-2)
Apertium translation data for the Maltese-Arabic pair
apertium-nno (1.0.0-2)
Apertium single language data for Norwegian Nynorsk
apertium-nno-nob (1.3.0-1)
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
apertium-nob (1.0.0-2)
Apertium single language data for Norwegian Bokmål
apertium-oci (0.1.0-1)
Apertium single language data for Occitan
apertium-oci-fra (0.3.0-1)
Apertium translation data for the Occitan-French pair
apertium-pol (0.1.1-2)
Apertium single language data for Polish
apertium-por-cat (0.9.0-1)
Apertium translation data for the Portuguese-Catalan pair
apertium-recursive (0.0.1-1build1)
Apertium recursive structural transfer module
apertium-rus (0.2.0~r82706-1)
Apertium single language data for Russian
apertium-separable (0.3.3-1build1)
Reordering separable/discontiguous multiwords
apertium-sme-nob (0.6.0~r61921-2)
Apertium translation data for the Northern Sami-Norwegian Bokmål pair
apertium-spa (1.1.0~r79716-2)
Apertium single language data for Spanish
apertium-spa-arg (0.4.0~r64399-2)
Apertium translation data for the Spanish-Aragonese pair
apertium-spa-cat (2.2.0-1)
Apertium translation data for the Spanish-Catalan pair
apertium-spa-ita (0.2.0~r78826-2)
Apertium translation data for the Spanish-Italian pair
apertium-swe (0.8.0-2)
Apertium single language data for Swedish
apertium-swe-dan (0.8.1-1)
Apertium translation data for the Swedish-Danish pair
apertium-swe-nor (0.3.1-1)
Apertium translation data for the Swedish-Norwegian pair
apertium-szl (0.1.0-1)
Apertium single language data for Silesian
apertium-tat (0.1.0~r60887-2)
Apertium single language data for Tatar
apertium-tur (0.2.0~r83161-2)
Apertium single language data for Turkish
apertium-ukr (0.1.0~r82563-2)
Apertium single language data for Ukrainian
apertium-urd (0.1.0~r61311-2)
Apertium single language data for Urdu
apertium-urd-hin (0.1.0~r64379-2)
Apertium translation data for the Urdu-Hindi pair
aragorn (1.2.38-2)
tRNA and tmRNA detection in nucleotide sequences
arden (1.0-5)
specificity control for read alignments using an artificial reference
ariba (2.14.4+ds-2build1)
Antibiotic Resistance Identification By Assembly
art-nextgen-simulation-tools (20160605+dfsg-4)
simulation tools to generate synthetic next-generation sequencing reads
art-nextgen-simulation-tools-profiles (20160605+dfsg-4)
profiles for art simulation tools
artemis (17.0.1+dfsg-2)
genome browser and annotation tool
artfastqgenerator (0.0.20150519-3)
outputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-3)
ou7puts artificial FASTQ files derived from a reference genome (examples)
asdftool (2.5.1-1)
Command line tool to manipulate ASDF scientific data files
ase (3.19.0-1)
Atomic Simulation Environment
assemblytics (1.0+ds-2)
detect and analyze structural variants from a genome assembly
astro-tasks (2.1)
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.2)
Astronomical pipeline software collection
astrometry-data-tycho2 (2-4)
Astrometry.net Tycho-2 index files
astrometry-data-tycho2-07 (2-4)
Astrometry.net Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-4)
Astrometry.net Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-4)
Astrometry.net Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-4)
Astrometry.net Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-4)
Astrometry.net Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-4)
Astrometry.net Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-4)
Astrometry.net Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-4)
Astrometry.net Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-4)
Astrometry.net Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-4)
Astrometry.net Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-4)
Astrometry.net Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-4)
Astrometry.net Tycho-2 little endian index files (60'-2000')
astrometry.net (0.78+dfsg-3build2)
Astrometry plate solver
astronomical-almanac (5.6-6)
astronomical almanac - calculate planet and star positions
atropos (1.1.24+dfsg-1build1)
NGS read trimming tool that is specific, sensitive, and speedy
augustus (3.3.3+dfsg-2build1)
gene prediction in eukaryotic genomes
augustus-data (3.3.3+dfsg-2build1)
data files for AUGUSTUS
autodock (4.2.6-7build1)
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-7build1)
instructions for getData to collect compounds
autodock-test (4.2.6-7build1)
test files for AutoDock
autodock-vina (1.1.2-5build3)
docking of small molecules to proteins
autogrid (4.2.6-7build1)
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-7build1)
test files for AutoGrid
avce00 (2.0.0-7)
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.93.0-1)
Molecular Graphics and Modelling System
avogadro-utils (1.93.0-3)
Molecular Graphics and Modelling System (library)
axe-demultiplexer (0.3.3+dfsg-1)
Trie-based DNA sequencing read demultiplexer
bagel (1.2.2-1ubuntu1)
Computational Chemistry Package
baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1build1)
software package for designing hybrid enrichment probes
bali-phy (3.4.1+dfsg-2build1)
Bayesian Inference of Alignment and Phylogeny
ballview (1.5.0+git20180813.37fc53c-4build2)
free molecular modeling and molecular graphics tool
bamtools (2.5.1+dfsg-5build1)
toolkit for manipulating BAM (genome alignment) files
bandage (0.8.1-1build1)
Bioinformatics Application for Navigating De novo Assembly Graphs Easily
barrnap (0.9+dfsg-1)
rapid ribosomal RNA prediction
bart (0.5.00-1)
tools for computational magnetic resonance imaging
bart-view (0.1.00-2)
viewer for multi-dimensional complex-valued data
bbmap (38.79+dfsg-1)
short read aligner and other bioinformatic tools
bbmap-jni (38.79+dfsg-1)
short read aligner and other bioinformatic tools - JNI library
bcalm (2.2.1-2build1)
de Bruijn compaction in low memory
bcftools (1.10.2-2)
genomic variant calling and manipulation of VCF/BCF files
beads (1.1.18+dfsg-4build1)
2-DE electrophoresis gel image spot detection
beagle (5.1-191125+dfsg-1)
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast2-mcmc (2.6.0+dfsg-1)
Bayesian MCMC phylogenetic inference
bedops (2.4.37+dfsg-2build1)
high-performance genomic feature operations
bedtools (2.27.1+dfsg-4ubuntu1)
suite of utilities for comparing genomic features
bedtools-test (2.27.1+dfsg-4ubuntu1)
test data for the bedtools package
belvu (4.44.1+dfsg-3build1)
multiple sequence alignment viewer and phylogenetic tool
berkeley-express (1.5.3+dfsg-1build1)
Streaming quantification for high-throughput sequencing
bio-eagle (2.4.1-1build2)
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.4.1-1build2)
Examples for bio-eagle
bio-rainbow (2.0.4+dfsg-1)
clustering and assembling short reads for bioinformatics
biobambam2 (2.0.95-1)
tools for early stage alignment file processing
biogenesis (0.8-3)
artificial life program that simulates evolution of organisms
bioperl (1.7.7-1)
Perl tools for computational molecular biology
bioperl-run (1.7.3-3)
BioPerl wrappers: scripts
biosquid (1.9g+cvs20050121-11)
utilities for biological sequence analysis
biosyntax (1.0.0b-1)
Syntax Highlighting for Computational Biology (metapackage)
biosyntax-common (1.0.0b-1)
Syntax Highlighting for Computational Biology (common files)
biosyntax-example (1.0.0b-1)
Syntax Highlighting for Computational Biology (example)
biosyntax-gedit (1.0.0b-1)
Syntax Highlighting for Computational Biology (gedit)
biosyntax-less (1.0.0b-1)
Syntax Highlighting for Computational Biology (less)
biosyntax-vim (1.0.0b-1)
Syntax Highlighting for Computational Biology (vim)
bitseq (0.7.5+dfsg-5build1)
Bayesian Inference of Transcripts from Sequencing Data
bitwise (0.40-1)
Interactive bitwise operation in ncurses
blasr (5.3.3+dfsg-4build1)
mapping single-molecule sequencing reads
blast2 (1:2.9.0-2)
transitional dummy package to ncbi-blast+-legacy
blinken (4:19.12.3-0ubuntu1)
KDE version of the Simon electronic memory game
blixem (4.44.1+dfsg-3build1)
interactive browser of sequence alignments
bmt (0.6-1)
software analysis benchmarking toolkit
bodr (10-2)
Blue Obelisk Data Repository
boinc-app-seti (8.00~svn4035-1build1)
SETI@home application for the BOINC client
boinc-app-seti-graphics (8.00~svn4035-1build1)
SETI@home application for the BOINC client (with graphics)
bolt-lmm (2.3.4+dfsg-2build1)
Efficient large cohorts genome-wide Bayesian mixed-model association testing
bolt-lmm-example (2.3.4+dfsg-2build1)
Examples for bolt-lmm
boolector (1.5.118.6b56be4.121013-1build1)
SMT solver for bit-vectors and arrays
bowtie (1.2.3+dfsg-4build1)
Ultrafast memory-efficient short read aligner
bowtie-examples (1.2.3+dfsg-4build1)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.3.5.1-6build1)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.3.5.1-6build1)
Examples for bowtie2
boxshade (3.3.1-13)
Pretty-printing of multiple sequence alignments
bppphyview (0.6.1-1build1)
Bio++ Phylogenetic Viewer
bppsuite (2.4.1-1build1)
Bio++ program suite
bppsuite-examples (2.4.1-1build1)
Examples for Bio++ program suite
brig (0.95+dfsg-3)
BLAST Ring Image Generator
bwa (0.7.17-4)
Burrows-Wheeler Aligner
cafeobj (1.6.0-2)
new generation algebraic specification and programming language
cafeobj-mode (1.6.0-2)
Emacs major mode for editing CafeOBJ source code
caffe-tools-cpu (1.0.0+git20180821.99bd997-5build3)
Tools for fast, open framework for Deep Learning (CPU_ONLY)
calculix-ccx (2.11-1build3)
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.11+dfsg-1build1)
Calculix cgx is a 3-dimensional pre- and post-processor for fem
callisto (1.1.0-2)
Daemon for e-Callisto hardware
camitk-actionstatemachine (4.1.2-4build1)
pipeline replay application for the CamiTK library
camitk-config (4.1.2-4build1)
Computer Assisted Medical Intervention Tool Kit - config
camitk-imp (4.1.2-4build1)
workbench application for the CamiTK library
canu (1.9+dfsg-1build1)
single molecule sequence assembler for genomes
casacore-data-igrf (12-1)
International Geomagnetic Reference Field data for casacore
casacore-data-jpl-de200 (2007.07.05+ds.1-1)
Jet Propulsion Laboratory Development Ephemeris DE200 for casacore
casacore-data-jpl-de405 (2007.07.05+ds.1-1)
Jet Propulsion Laboratory Development Ephemeris DE405 for casacore
casacore-data-lines (0+git2016.11.26-2)
Table of spectral line frequencies for casacore
casacore-data-observatories (0+git2018.12.08-2)
Table of radio observatory coordinates for casacore
casacore-data-sources (2-2)
Table of ICRF reference source coordinates for casacore
casacore-data-tai-utc (1.2)
Difference table between TAI and UTC for casacore
casacore-tools (3.2.1-4build3)
Tools built with CASA
cassbeam (1.1-2)
Cassegrain antenna modelling
cassiopee (1.0.9-2build1)
index and search tool in genomic sequences
cba (0.3.6-5build1)
Continuous Beam Analysis
cbflib-bin (0.9.5.18+dfsg1-1build1)
utilities to manipulate CBF files
cbmc (5.10-5ubuntu1)
bounded model checker for C and C++ programs
cclib (1.6.2-2)
Parsers and algorithms for computational chemistry
cct (20170919+dfsg-1)
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
cct-examples (20170919+dfsg-1)
example data for testing the package cct
cd-hit (4.8.1-2build1)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-6build1)
Constant DataBase indexing and retrieval tools for multi-FASTA files
centrifuge (1.0.3-3build1)
rapid and memory-efficient system for classification of DNA sequences
cernlib (20061220+dfsg3-4.4build1)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4.4build1)
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (20061220+dfsg3-4.4build1)
CERNLIB data analysis suite - core development files
cernlib-extras (20061220+dfsg3-4.4build1)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3.1build4)
CERNLIB Monte Carlo libraries
cg3 (1.3.1-2build3)
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cg3-dev (1.3.1-2build3)
Metapackage providing both CG-3 CLI dev tools and dev library
cgns-convert (3.4.0-1)
CFD General Notation System - Conversion tools
cgview (0.0.20100111-4)
Circular Genome Viewer
changeo (0.4.6-1)
Repertoire clonal assignment toolkit (Python 3)
checkit-tiff (0.2.3-2)
conformance checker for baseline TIFFs
chemical-structures (2.2.dfsg.0-15)
set of molecular structures in open formats
chemps2 (1.8.9-1build3)
Executable to call libchemps2-3 from the command line
chemtool (1.6.14-5)
chemical structures drawing program
chimeraslayer (20101212+dfsg1-3)
detects likely chimeras in PCR amplified DNA
chromhmm (1.20+dfsg-1)
Chromatin state discovery and characterization
chromimpute (1.0.3+dfsg-1)
Large-scale systematic epigenome imputation
circlator (1.5.6-1)
circularize genome assemblies
circos (0.69.9+dfsg-1)
plotter for visualizing data
circos-tools (0.23-1)
plotter for visualizing data - helper utilities
ckon (0.7.1-3build13)
automatic build tool for ROOT data analysis software
clearcut (1.0.9-5)
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-10build1)
inference of bacterial microevolution using multilocus sequence data
clonalframeml (1.12-1)
Efficient Inference of Recombination in Whole Bacterial Genomes
clonalorigin (1.0-3build1)
inference of homologous recombination in bacteria using whole genome sequences
clustalo (1.2.4-4build1)
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-6build1)
global multiple nucleotide or peptide sequence alignment
cmor-tables (3.3-1)
MIP tables for the Climate Model Output Rewriter library
cmtk (3.3.1p1+dfsg-2build1)
Computational Morphometry Toolkit
cnvkit (0.9.6-3)
Copy number variant detection from targeted DNA sequencing
cod-tools (2.10+dfsg-1)
tools for manipulating CIF format files
code-saturne (6.0.2-1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (6.0.2-1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (6.0.2-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (6.0.2-1)
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-4)
Correspondence Analysis of Codon Usage
coinor-cbc (2.10.3+repack1-1build1)
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.17.5+repack1-1)
Coin-or linear programming solver
coinor-csdp (6.2.0-1)
A software package for semidefinite programming
coinor-libcbc3 (2.10.3+repack1-1build1)
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.60.3+repack1-2)
COIN-OR Cut Generation Library
coinor-libclp1 (1.17.5+repack1-1)
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3v5 (2.11.4+repack1-1)
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0v5 (1.0.6-3.1ubuntu3)
Formulation of Linear Optimization Problems in C++
coinor-libosi1v5 (0.108.6+repack1-1)
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.16+repack1-2build1)
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-libvol1 (1.5.4-4)
Coin-or linear programming solver (libraries)
coinor-symphony (5.6.16+repack1-2build1)
COIN-OR solver for mixed-integer linear programs
colmap (3.6+dev2+git20191105-1build1)
Structure-from-Motion and Multi-View Stereo
comet-ms (2018012-1build1)
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg.1-4build1)
predictor of protein ligand binding sites from structure and conservation
conda-package-handling (1.6.0-2build1)
create and extract conda packages of various formats
connectome-workbench (1.4.2-1build1)
brain visualization, analysis and discovery tool
conservation-code (20110309.0-8)
protein sequence conservation scoring tool
cp2k (6.1-3ubuntu2)
Ab Initio Molecular Dynamics
cp2k-data (6.1-3ubuntu2)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.9+dfsg-2)
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.3.9+dfsg-2)
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.4.3+dfsg-1build1)
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.4.3+dfsg-1build1)
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.16.5+dfsg-1)
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.16.5+dfsg-1)
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (2.4.6+dfsg-1build1)
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (2.4.6+dfsg-1build1)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-muse (2.8.1+dfsg-1)
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (2.8.1+dfsg-1)
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.8+dfsg-1)
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.8+dfsg-1)
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-uves (5.10.4+dfsg-1)
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (5.10.4+dfsg-1)
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (3.3.0+dfsg-1build1)
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (3.3.0+dfsg-1build1)
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.3.8+dfsg-1)
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.3.8+dfsg-1)
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (3.3.5+dfsg-2)
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (3.3.5+dfsg-2)
ESO data reduction pipeline calibration data downloader for XSHOOTER
cpuinfo (0.0~git20190201.d5e37ad-2)
CPU INFOrmation library (binary utilities)
crac (2.5.2+dfsg-2build2)
integrated RNA-Seq read analysis
critterding (1.0-beta12.1-1.3build1)
Evolving Artificial Life
ctdconverter (2.1-1)
Convert CTD files into Galaxy tool and CWL CommandLineTool files
ctsim (6.0.2-3build1)
Computed tomography simulator
ctsim-help (6.0.2-3build1)
Online help file for CTSim
cutadapt (2.8-2build1)
Clean biological sequences from high-throughput sequencing reads
cwltool (2.0.20200224214940+dfsg-1)
Common Workflow Language reference implementation
daligner (1.0+git20200115.c2b47da-1)
local alignment discovery between long nucleotide sequencing reads
darknet (0.0.0+git20180914.61c9d02e-2build2)
Open Source Neural Networks in C
dascrubber (1.1-1)
alignment-based scrubbing pipeline for DNA sequencing reads
datalad (0.12.4-2)
data files management and distribution platform
datalad-container (1.0.0-2)
DataLad extension for working with containerized environments
dawg (1.2-2build1)
simulate the evolution of recombinant DNA sequences
dazzdb (1.0+git20200115.d8adde7-2)
manage nucleotide sequencing read data
dcm2niix (1.0.20181125-1build1)
next generation DICOM to NIfTI converter
dcmtk (3.6.4-2.1build2)
OFFIS DICOM toolkit command line utilities
(2.1)
Debian Astronomy Pure Blends Logo
deepnano (0.0+git20170813.e8a621e-3.1)
alternative basecaller for MinION reads of genomic sequences
deepnano-data (0.0+git20170813.e8a621e-3.1)
alternative basecaller for MinION reads of genomic sequences (data)
delly (0.8.2-1)
Structural variant discovery by read analysis
dh-r (20200104)
Debian helper tools for packaging R libraries
dialign (2.2.1-10)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-12)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-12)
Segment-based multiple sequence alignment (data files)
diamond-aligner (0.9.30-3)
accelerated BLAST compatible local sequence aligner
dicomnifti (2.33.1-1build1)
converts DICOM files into the NIfTI format
dimbl (0.15-2.1build1)
Distributed Memory Based Learner
dindel (1.01-wu1-3+dfsg-1build1)
determines indel calls from short-read data
disulfinder (1.2.11-8build1)
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-8build1)
data files for predictor of disulfide bonds in proteins
dlmodelbox (1.1.1-1)
Swiss Army Knife of Deep Learning Models
dnaclust (3-7build1)
tool for clustering millions of short DNA sequences
dotter (4.44.1+dfsg-3build1)
detailed comparison of two genomic sequences
dozzaqueux (3.51-2)
simulator for chemical mixtures
dozzaqueux-data (3.51-2)
databases for chemical mixtures
dpuser (4.0+dfsg-2build1)
Interactive language for handling numbers, strings, and matrices
drawxtl (5.5-5build1)
crystal structure viewer
drslib (0.3.1.p3-2)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.4build1)
Software for Semidefinite Programming
dssp (3.0.0-3build1)
protein secondary structure assignment based on 3D structure
dwgsim (0.1.12-3)
short sequencing read simulator
dx (1:4.4.4-12build2)
OpenDX (IBM Visualization Data Explorer) - main package
dxf2gcode (20170925-4)
prepares drawings of parts for automatic machine tools
dxsamples (4.4.0-4)
Sample programs for the OpenDX Data Explorer
e-mem (1.0.1-2build1)
Efficient computation of Maximal Exact Matches for very large genomes
e00compr (1.0.1-5)
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-5build1)
command-line tools for processing biological sequencing data
easychem (0.6-8build1)
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
ecflow-client (4.17.1-1build2)
Client tools for Meteorological workflow
ecflow-server (4.17.1-1build2)
Meteorological workflow controller - server
ecopcr (1.0.1+dfsg-1)
estimate PCR barcode primers quality
edfbrowser (1.72+dfsg-1)
viewer for biosignal storage files such as bdf and edf
edlib-aligner (1.2.4-2ubuntu1)
edlib sequence alignment tool using edit distance
edtsurf (0.2009-6build1)
triangulated mesh surfaces for protein structures
elk-lapw (6.3.2-1)
All-Electron Density-Functional Electronic Structure Code
elki (0.7.1-10.1)
Data mining algorithm development framework
elki-dev (0.7.1-10.1)
Data mining algorithm development framework - development files
elph (1.0.1-4build1)
DNA/protein sequence motif finder
embassy-domainatrix (0.1.660-3)
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.660-3)
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.660-3)
Extra EMBOSS commands to search for protein domains
emboss (6.6.0+dfsg-7ubuntu2)
European molecular biology open software suite
emboss-data (6.6.0+dfsg-7ubuntu2)
data files for the EMBOSS package
emboss-explorer (2.2.0-10)
web-based GUI to EMBOSS
emmax (0~beta.20100307-1)
genetic mapping considering population structure
engauge-digitizer (10.10+ds.1-1build1)
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-2)
pseudorandom number sequence test program
epigrass (2.5.0+dfsg-1build1)
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2+dfsg-4)
Library for wavelet image compression - tools
ergo (3.8-1build1)
Quantum chemistry program for large-scale calculations
ergo-data (3.8-1build1)
Quantum chemistry program for large-scale calculations - data package
eso-midas (19.02pl1.1-1build1)
European Southern Observatory Munich Image Data Analysis System
eso-midas-testdata (19.02pl1.1-1build1)
Test data files for ESO-MIDAS
eso-pipelines (1.3)
ESO VLT Instrument pipeline collection
esorex (3.13.2+dfsg-3build1)
Execution Tool for European Southern Observatory pipelines
estscan (3.0.3-3build1)
ORF-independent detector of coding DNA sequences
esys-particle (2.3.5+dfsg1-4build2)
Software for particle-based numerical modelling (MPI version)
etsf-io (1.0.4-4build2)
Binary tools to check, merge and read ETSF files
examl (3.0.21-3)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
exonerate (2.4.0-4)
generic tool for pairwise sequence comparison
expeyes (4.6.2-1)
hardware & software framework for developing science experiments
expeyes-clib (4.6.2-1)
hardware & software framework for developing science experiments
eye (19.0928.2249~ds-1)
semantic web reasoning engine
eyes17 (4.6.2-1)
hardware & software framework for developing science experiments
fast5 (0.6.5-4build1)
utilities for manipulating Oxford Nanopore Fast5 files
fastahack (1.0.0+dfsg-5build1)
utility for indexing and sequence extraction from FASTA files
fastaq (3.17.0-2)
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-14)
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-2)
faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix100+dfsg-2)
Some papers about fastlink
fastml (3.11-2build1)
maximum likelihood ancestral amino-acid sequence reconstruction
fastp (0.20.0+dfsg-1build1)
Ultra-fast all-in-one FASTQ preprocessor
fastqc (0.11.9+dfsg-2)
quality control for high throughput sequence data
fastqtl (2.184+dfsg-7build2)
Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttree (2.1.11-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fcc (2.8-1build3)
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.53-1)
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.9-3)
simple index/database for huge amounts of small files
figtree (1.4.4-4)
graphical phylogenetic tree viewer
fitgcp (0.0.20150429-3)
fitting genome coverage distributions with mixture models
fitscut (1.4.4-5)
Extract cutouts from FITS image format files
fitsh (0.9.2-1)
Software package for astronomical image processing
fitspng (1.4-1build1)
FITS to PNG converter
fitsverify (4.20-1build1)
FITS File Format-Verification Tool
fityk (1.3.1-5build1)
general-purpose nonlinear curve fitting and data analysis
flexbar (1:3.5.0-2build1)
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-13build1)
Trajectory model for tracing air transport phenomena
fml-asm (0.1-9ubuntu1)
tool for assembling Illumina short reads in small regions
foma (1:0.9.18+r243-6)
Tools for constructing various finite-state automata
foma-bin (1:0.9.18+r243-6)
Transitional package for foma
form (4.2.1+git20200217-1)
Symbolic manipulation system
fractalnow (0.8.2-4build1)
Fast, advanced fractal generator
(1.4.77-1.2build1)
Free42 is a re-implementation of the HP-42S calculator
freebayes (1.3.2-2)
Bayesian haplotype-based polymorphism discovery and genotyping
freecad (0.18.4+dfsg2-1ubuntu4)
Extensible Open Source CAx program
freecad-common (0.18.4+dfsg2-1ubuntu4)
Extensible Open Source CAx program - common files
freecad-python3 (0.18.4+dfsg2-1ubuntu4)
Extensible Open Source CAx program - Python 3 binaries
freecad-runtime (0.18.4+dfsg2-1ubuntu4)
Extensible Open Source CAx program - runtime files
freecontact (1.0.21-7build1)
fast protein contact predictor
frog (0.15-1build2)
tagger and parser for natural languages (runtime)
frogdata (0.16-1)
Data files for Frog
fsa (1.15.9+dfsg-4build1)
Fast Statistical Alignment of protein, RNA or DNA sequences
fsm-lite (1.0-3build1)
frequency-based string mining (lite)
ftools-fv (5.5+dfsg-2build2)
Tool for viewing and editing FITS format files
ftools-pow (5.5+dfsg-2build2)
Curve plotting and image display interface tool
funtools (1.4.7-4)
Minimal buy-in FITS utility package
fxt-tools (0.3.9-3)
Multithreaded tracing library
g3data (1:1.5.3-2.1build1)
extract data from scanned graphs
gabedit (2.5.0-1)
graphical user interface to Ab Initio packages
galileo (0.5.1-6)
Utility to securely synchronize a Fitbit device with the Fitbit web service
galileo-daemon (0.5.1-6)
Utility to securely synchronize a Fitbit device - daemon
gamgi (0.17.3-2)
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.3-2)
General Atomistic Modelling Graphic Interface (data)
garli (2.1-3build1)
phylogenetic analysis of molecular sequence data using maximum-likelihood
garli-examples (2.1-3build1)
phylogenetic analysis of molecular sequence data (examples)
garli-mpi (2.1-3build1)
phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)
garlic (1.6-3)
visualization program for biomolecules
gasic (0.0.r19-5)
genome abundance similarity correction
gatb-core (1.4.1+git20191209.9398f28+dfsg-2)
Genome Analysis Toolbox with de-Bruijn graph
gatb-core-testdata (1.4.1+git20191209.9398f28+dfsg-2)
Genome Analysis Toolbox with de-Bruijn graph (test data)
gausssum (3.0.2-2)
parse and display Gaussian, GAMESS, and etc's output
gazebo9 (9.12.0+dfsg-1build2)
Open Source Robotics Simulator - Binaries
gazebo9-common (9.12.0+dfsg-1build2)
Open Source Robotics Simulator - Shared files
gazebo9-plugin-base (9.12.0+dfsg-1build2)
Open Source Robotics Simulator - base plug-ins
gbrowse (2.56+dfsg-8)
GMOD Generic Genome Browser
gbrowse-calign (2.56+dfsg-8)
CAlign helper
gbrowse-data (2.56+dfsg-8)
Sample data to use GBrowse
gbutils (5.7.1-1)
utilities for command line econometrics
gchempaint (0.14.17-3)
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.17-3)
lightweight crystal structures visualizer
gcu-bin (0.14.17-3)
GNOME chemistry utils (helper applications)
gcx (1.3-1.1build1)
astronomical image processing and photometry gtk+ application
gdal-bin (3.0.4+dfsg-1build3)
Geospatial Data Abstraction Library - Utility programs
gdal-data (3.0.4+dfsg-1build3)
Geospatial Data Abstraction Library - Data files
gdis (0.90-5build1)
molecular and crystal model viewer
gdis-data (0.90-5build1)
molecular and crystal model viewer (data files)
gdl-mpfit (1.85+2017.01.03-4)
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-10)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-10)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11build4)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11build4)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (2.0.0-1build1)
Periodic Table viewer
gemma (0.98.1+dfsg-1)
Genome-wide Efficient Mixed Model Association
gemma-doc (0.98.1+dfsg-1)
Example folder for GEMMA
genometester (4.0+git20180508.a9c14a6+dfsg-1)
toolkit for performing set operations on k-mer lists
genomethreader (1.7.3+dfsg-5)
software tool to compute gene structure predictions
genometools (1.6.1+ds-2)
versatile genome analysis toolkit
genometools-common (1.6.1+ds-2)
shared data files for GenomeTools
geographiclib-tools (1.50.1-1build1)
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.5.1-2)
GeoTIFF (geografic enabled TIFF) library -- tools
getdata (0.2-3)
management of external databases
gff2aplot (2.0-11)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98l-2)
produces PostScript graphical output from GFF-files
gffread (0.11.7-2)
GFF/GTF format conversions, region filtering, FASTA sequence extraction
gfsview (20121130+dfsg-6)
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-6)
batch-version of viewer for Gerris simulation files
ghkl (5.0.0.2569-1build1)
diffractometer computation control application
ghmm (0.9~rc3-2ubuntu2)
General Hidden-Markov-Model library - tools
giella-core (0.1.1~r129227+svn121148-2ubuntu1)
GTCORE files for building Giellatekno language packages
giella-sme (0.0.20150917~r121176-3)
Giellatekno single language data for North Saami
giella-sme-dev (0.0.20150917~r121176-3)
Giellatekno single language data for North Saami (dev extras)
ginga (3.0.0-1)
Astronomical image viewer
ginkgocadx (3.8.8-3build1)
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-8)
gapped protein motifs from unaligned sequences
glueviz (0.15.5+dfsg-1)
Linked data visualization
gmap (2020-04-08+ds1-1)
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (6.0.0+dfsg-1build2)
Generic Mapping Tools
gmt-common (6.0.0+dfsg-1build2)
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.4-2)
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.7-4)
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.7-4)
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.7-4)
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.7-4)
Low resolution coastlines for the Generic Mapping Tools
gnuastro (0.11-1build1)
GNU Astronomy Utilities programs
gpaw (20.1.0-2build1)
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-2)
gpaw datasets/setups
gperiodic (3.0.3-1)
periodic table application
gpx (2.5.2-4)
Gcode to x3g conversion post processor
gr-fcdproplus (3.8~20190817-3build3)
Funcube Dongle Pro Plus controller for GNU Radio
grabix (0.1.7-2build1)
wee tool for random access into BGZF files
grads (3:2.2.1-2build3)
Grid Analysis and Display System for earth science data
graphlan (1.1.3-2)
circular representations of taxonomic and phylogenetic trees
grass (7.8.2-1build3)
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.8.2-1build3)
GRASS GIS core components
grass-doc (7.8.2-1build3)
GRASS GIS user documentation
grass-gui (7.8.2-1build3)
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-3)
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-3)
data files for Gravit
grinder (0.5.4-5)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (2020.1-1)
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2020.1-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (2020.1-1)
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (2020.1-1)
Molecular dynamics sim, binaries for OpenMPI parallelization
gubbins (2.3.5-1)
phylogenetic analysis of genome sequences
gvb (1.4-1.1)
visual simulator of 1 and 2-dimensional vibrations
gwama (2.2.2+dfsg-2build1)
Genome-Wide Association Meta Analysis
gwyddion (2.55-3)
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.55-3)
architecture-independent files for Gwyddion SPM analysis tool
gyoto (1.4.4-3)
General relativistic geodesic integration and ray-tracing
gyoto-bin (1.4.4-3)
General relativistic ray-tracing command-line interface
h5utils (1.13.1-3build1)
HDF5 files visualization tools
harminv (1.4.1-2build1)
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.3-4build2)
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf-compass (0.7~b8-2)
viewer for HDF5 and related formats
hdf5-helpers (1.10.4+repack-11ubuntu1)
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.10.4+repack-11ubuntu1)
Hierarchical Data Format 5 (HDF5) - Runtime tools
herisvm (0.8.2-1)
machine learning tools for classification algorithms
hfst (3.15.1-2build3)
Helsinki Finite-State Transducer Technology
hfst-ospell (0.5.0-2build2)
Spell checker library and tool based on HFST
hhsuite (3.2.0-2build1)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (3.2.0-2build1)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hilive (2.0a-3build2)
realtime alignment of Illumina reads
hinge (0.5.0-6)
long read genome assembler based on hinging
hisat2 (2.1.0-4)
graph-based alignment of short nucleotide reads to many genomes
hmmer (3.3+dfsg2-1)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2+dfsg-6)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2+dfsg-6)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5.0-1)
prints the date in Latin
hpcc (1.5.0-2)
HPC Challenge benchmark
htcondor (8.6.8~dfsg.1-2ubuntu1)
distributed workload management system
hyphy-common (2.5.1+dfsg-3)
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.5.1+dfsg-3)
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.5.1+dfsg-3)
Hypothesis testing using Phylogenies (pthreads version)
idba (1.1.3-5build1)
iterative De Bruijn Graph short read assemblers
igdiscover (0.11-3)
analyzes antibody repertoires to find new V genes
igor (1.3.0+dfsg-1build1)
infers V(D)J recombination processes from sequencing data
imagej (1.52r-1)
Image processing program with a focus on microscopy images
imview (1.1.9h-1build1)
Image viewing and analysis application
indelible (1.03-4build1)
powerful and flexible simulator of biological evolution
indigo-utils (1.2.3-3build1)
Organic Chemistry Toolkit Utilities
infernal (1.1.3-4)
inference of RNA secondary structural alignments
inhomog (0.1.9.2-1)
kinematical backreaction and average scale factor evolution
inkscape-speleo (1.8-4)
Inkscape plugin to help draw surveys
inkscape-survex-export (1.0-3)
Inkscape plugin to digitise printed surveys
ipig (0.0.r5-3)
integrating PSMs into genome browser visualisations
iqtree (1.6.12+dfsg-1build1)
efficient phylogenetic software by maximum likelihood
iraf (2.16.1+2018.11.01-3)
Image Reduction and Analysis Facility
iraf-dev (2.16.1+2018.11.01-3)
Image Reduction and Analysis Facility (development files)
iraf-fitsutil (2018.07.06-4)
FITS utilities for IRAF
iraf-mscred (5.05+2018.07.09-1build2)
CCD mosaic reduction package for IRAF
iraf-noao (2.16.1+2018.11.01-3)
IRAF NOAO data reduction package
iraf-noao-dev (2.16.1+2018.11.01-3)
IRAF NOAO data reduction package (development files)
iraf-rvsao (2.8.3-1build2)
IRAF package to obtain radial velocities from spectra
iraf-sptable (1.0~pre20180612-1build2)
IRAF package for Tabular Spectra
iraf-wcstools (3.9.5-3)
Handle the WCS of a FITS image (IRAF package)
ismrmrd-schema (1.4.0-1build1)
schema for ISMRMRD
ismrmrd-tools (1.4.0-1build1)
command-line tools for ISMRMRD
itksnap (3.6.0-5build1)
semi-automatic segmentation of structures in 3D images
iva (1.0.9+ds-10)
iterative virus sequence assembler
jaligner (1.0+dfsg-6)
Smith-Waterman algorithm with Gotoh's improvement
jblas (1.2.4-2build1)
fast linear algebra library for Java
jellyfish (2.3.0-4build1)
count k-mers in DNA sequences
jellyfish-examples (2.3.0-4build1)
count k-mers in DNA sequences (examples for testing)
jellyfish1 (1.1.11-4build1)
count k-mers in DNA sequences
jemboss (6.6.0+dfsg-7ubuntu2)
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-8)
HPC selection of models of nucleotide substitution
jmol (14.6.4+2016.11.05+dfsg1-4build1)
Molecular Viewer
jsamp (1.3.7-1)
Java Simple Application Messaging Protocol tool for VO
jube (2.2.2-1)
JUBE Benchmarking Environment
julia (1.4.1+dfsg-1)
high-performance programming language for technical computing
julia-common (1.4.1+dfsg-1)
high-performance programming language for technical computing (common files)
jupyter-notebook (6.0.3-2)
Jupyter interactive notebook
kalign (1:2.03+20110620-5)
Global and progressive multiple sequence alignment
kallisto (0.46.1+dfsg-2build1)
near-optimal RNA-Seq quantification
kallisto-examples (0.46.1+dfsg-2build1)
near-optimal RNA-Seq quantification (example data)
kalzium (4:19.12.3-0ubuntu1)
periodic table and chemistry tools
kalzium-data (4:19.12.3-0ubuntu1)
data files for Kalzium
kaptive (0.7.0-2)
obtain information about K and O types for Klebsiella genome assemblies
kaptive-data (0.7.0-2)
reference data for kaptive for Klebsiella genome assemblies
kaptive-example (0.7.0-2)
example data for kaptive for Klebsiella genome assemblies
khmer-common (2.1.2+dfsg-6build2)
common files for the khmer project tools
king-probe (2.16.160404+git20180613.a09b012-1)
Evaluate and visualize protein interatomic packing
kissplice (2.4.0-p1-5ubuntu1)
Detection of various kinds of polymorphisms in RNA-seq data
kleborate (1.0.0-3)
tool to screen Klebsiella genome assemblies
kleborate-examples (1.0.0-3)
tool to screen Klebsiella genome assemblies (example data)
klustakwik (2.0.1-1build2)
automatic sorting of the samples (spikes) into clusters
kma (1.2.21-1)
mapping genomic sequences to raw reads directly against redundant databases
kmc (2.3+dfsg-7build1)
count kmers in genomic sequences
kmerresistance (2.2.0-1)
correlates mapped genes with the predicted species of WGS samples
konclude (0.6.2+939~dfsg-1build1)
tableau-based description logic reasoner for the semantic web
kraken (1.1.1-1build1)
assigning taxonomic labels to short DNA sequences
kraken2 (2.0.8~beta-1build1)
taxonomic classification system using exact k-mer matches
kst (2.0.8-3build4)
scientific data plotting tool
kstars (5:3.4.1-1)
desktop planetarium, observation planning and telescope control
kstars-data (5:3.4.1-1)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9.1)
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.4build1)
CERNLIB data analysis suite - KUIP terminal emulator
lagan (2.0-5build1)
highly parametrizable pairwise global genome sequence aligner
lamarc (2.1.10.1+dfsg-4build1)
Likelihood Analysis with Metropolis Algorithm using Random Coalescence
lambda-align (1.0.3-6)
Local Aligner for Massive Biological DatA
lambda-align2 (2.0.0-2build1)
Local Aligner for Massive Biological DatA - v2
lammps (20191120+dfsg1-2build2)
Molecular Dynamics Simulator
last-align (1060-1)
genome-scale comparison of biological sequences
lefse (1.0.8-3)
determine features of organisms, clades, taxonomic units, genes
libadios-bin (1.13.1-20)
ADIOS Adaptable IO system for simulations - binaries
libadios-examples (1.13.1-20)
Examples for the ADIOS Adaptable IO system
libatlas-ecmwf-utils (0.19.0-8build1)
Numerical weather prediction and climate modelling library - utilities
libball1.5-data (1.5.0+git20180813.37fc53c-4build2)
Biochemical Algorithms Library (data files)
libbio-db-hts-perl (3.01-3)
Perl interface to the HTS library
libbio-tools-phylo-paml-perl (1.7.3-2)
Bioperl interface to the PAML suite
libbio-tools-run-alignment-clustalw-perl (1.7.4-1)
Bioperl interface to Clustal W
libbio-tools-run-alignment-tcoffee-perl (1.7.4-1)
Bioperl interface to T-Coffee
libbiojava-java (1:1.7.1-8)
Java API to biological data and applications (default version)
libbiojava-java-demos (1:1.7.1-8)
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-8)
Java API to biological data and applications (version 1.7)
libcamitk4 (4.1.2-4build1)
Computer Assisted Medical Intervention Tool Kit - runtime
libcassie1v5 (1.0.9-2build1)
library implementating search algorithms
libcg3-1 (1.3.1-2build3)
Runtime for CG-3
libclhep2.1v5 (2.1.4.1+dfsg-1build1)
CLHEP: A Class Library for High Energy Physics
libdivsufsort3 (2.0.1-4)
fast suffix array construction
libeccodes-data (2.16.0-1)
GRIB and BUFR enecoding/encoding software library - data
libeckit-utils (1.4.7-7build1)
C++ toolkit for ECMWF tools and applications - development files
libej0 (4.6.2-1)
hardware & software framework for developing science experiments
libgenometools0 (1.6.1+ds-2)
versatile genome analysis library
libgfsgl0 (20121130+dfsg-6)
graphical viewer for Gerris simulation files. Shared library
libghemical-data (3.0.0-4.2build3)
Molecular Modelling Library (data files)
libgiac0 (1.5.0.85+dfsg1-3)
Computer Algebra System C++ library
libgtkdatabox0-glade (1:0.9.3.1-1)
Gtk+ library to display large amounts of numerical data (glade API)
libgtkdatabox0-libglade (1:0.9.3.1-1)
Gtk+ library to display large amounts of numerical data (glade lib)
libhdf5-jni (1.10.4+repack-11ubuntu1)
native library used by libhdf5-java
libismrmrd1.3 (1.4.0-1build1)
ISMRM Raw Data format (ISMRMRD)
liblammps-dev (20191120+dfsg1-2build2)
Molecular Dynamics Simulator (dev files)
liblammps0 (20191120+dfsg1-2build2)
Molecular Dynamics Simulator (shared library)
libliggghts3 (3.8.0+repack1-5build1)
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (2.3.0+dfsg-3build1)
Standalone applications for LIBLINEAR
liblorene-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu6)
liblorene shared library
liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1ubuntu6)
liblorene_export shared library
liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu6)
liblorenef77 shared library
libmstoolkit-tools (82-6build1)
libraries for manipulating mass spectrometry data - tools
libncarg-bin (6.6.2-1build4)
NCAR command-language library - development tools
libncarg-data (6.6.2-1build4)
NCAR command-language library - Data
libngram-tools (1.3.2-3build1)
OpenGRM n-gram Language Modeling toolkit
libocas-tools (0.97+dfsg-6)
Standalone applications implementing the OCAS solver
libopenfoam (1906.191111+dfsg1-2build1)
Open source toolbox for Computational Fluid Dynamics (CFD) - libraries
libotb (7.0.0+dfsg-2build3)
ORFEO Toolbox library metapackage
libotb-apps (7.0.0+dfsg-2build3)
Plugins for ORFEO Toolbox applications
libpluto-jpl-eph-dev (0.0~git20180228-1.1build1)
development files to interact with JPL ephemeres data
libpluto-lunar-dev (0.0~git20180825.e34c1d1-1build1)
development files for astronomical Lunar library
libpwiz-tools (3.0.18342-2)
ProteoWizard command line tools
libqgis-customwidgets (3.10.4+dfsg-1ubuntu2)
QGIS custom widgets for Qt Designer
libqtpropertybrowser4 (4.1.2-4build1)
Qt Property Browser Library - runtime
librasterlite2-1 (1.1.0~beta0+really1.0.0~rc0+devel1-2build1)
library for huge raster coverages using a SpatiaLite DBMS
librsl1 (1.43-1.2build1)
TRMM Radar Software Library
libsilo-bin (4.10.2.real-7)
Utilities to manipulate libsilo files
libsqlite3-mod-virtualpg (2.0.0~rc0-1)
Loadable dynamic extension to both SQLite and SpatiaLite
libsquizz (0.99d+dfsg-2)
Conversion libs used by squizz genetic sequence converter
libssm-bin (1.4.0-1build1)
macromolecular superposition library - binaries
libstxxl1v5 (1.4.1-3build1)
C++ Standard Template Library for extra large datasets
libvcflib-tools (1.0.1+dfsg-3)
C++ library for parsing and manipulating VCF files (tools)
libxy-bin (1.3-1.1build2)
xylib - utilities
libyade (2020.01a-6build2)
Platform for discrete element modeling. Libraries
liggghts (3.8.0+repack1-5build1)
Open Source DEM Particle Simulation Software.
litl-tools (0.1.9-7)
Lightweight Trace Library - tools
logol (1.7.9-2)
Pattern matching tool using Logol language
logol-bin (1.7.9-2)
Pattern matching tool using Logol language
loki (2.4.7.4-10)
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-10)
MCMC linkage analysis on general pedigrees (PS manual)
looptools (2.8-1build3)
Integral Evaluator of One-loop Feynman Diagram
lorene (0.0.0~cvs20161116+dfsg-1ubuntu6)
framework for numerical relativity
lorene-codes-src (0.0.0~cvs20161116+dfsg-1ubuntu6)
source files of LORENE-based codes
ltrsift (1.0.2-8)
postprocessing and classification of LTR retrotransposons
lttoolbox-dev (3.5.1-2build2)
Development tools and library for lttoolbox
lucy (1.20-1)
DNA sequence quality and vector trimming tool
lutefisk (1.0.7+dfsg-4build1)
de novo interpretation of peptide CID spectra
lxi-tools (1.21-1build1)
LAN eXtensions for Instrumentation (LXI) software interface
maffilter (1.3.1+dfsg-1build1)
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.3.1+dfsg-1build1)
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.453-1)
Multiple alignment program for amino acid or nucleotide sequences
mapdamage (2.2.0+dfsg-1)
tracking and quantifying damage patterns in ancient DNA sequences
mapsembler2 (2.2.4+dfsg-3build2)
bioinformatics targeted assembly software
maq (0.7.1-8build1)
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-9build1)
graphical read alignment viewer for short gene sequences
mash (2.2.2+dfsg-1build1)
fast genome and metagenome distance estimation using MinHash
maude (2.7-2build2)
high-performance logical framework
mauve-aligner (2.4.0+4736-2build1)
multiple genome alignment
mayavi2 (4.7.1-2build1)
scientific visualization package for 2-D and 3-D data
mbt (3.4-1build1)
memory-based tagger-generator and tagger
mbtserver (0.12-1build1)
Server extensions for the MBT tagger
meep (1.12.0-2build2)
software package for FDTD simulation
meep-mpi-default (1.12.0-2build2)
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.12.0-3build2)
software package for FDTD simulation, parallel (OpenMPI) version
melting (5.2.0-1)
compute the melting temperature of nucleic acid duplex
metaphlan2 (2.9.22-1)
Metagenomic Phylogenetic Analysis
metaphlan2-data (2.6.0+ds-4)
data package for Metagenomic Phylogenetic Analysis
metastudent (2.0.1-8)
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.1-4)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-4)
predictor of Gene Ontology terms from protein sequence - data #2
metview (5.7.5-1)
Interactive data visualization and analysis environment,
metview-data (5.7.5-1)
Data needed for the Metview data analysis environment
mhap (2.1.3+dfsg-2)
locality-sensitive hashing to detect long-read overlaps
mia-doctools (2.4.6-5build3)
Helper scripts for run-time document creation
mia-tools (2.4.6-5build3)
Command line tools for gray scale image processing
mia-viewit (1.0.5-2build1)
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.14-2)
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-5)
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-3)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-3)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.6.2-1)
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-3build2)
MNI medical image format tools
minia (1.6906-2)
short-read biological sequence assembler
miniasm (0.3+dfsg-1)
ultrafast de novo assembler for long noisy DNA sequencing reads
minimac4 (1.0.2-2build1)
Fast Imputation Based on State Space Reduction HMM
minimap (0.2-4)
tool for approximate mapping of long biosequences such as DNA reads
minimap2 (2.17+dfsg-2)
versatile pairwise aligner for genomic and spliced nucleotide sequences
minisat (1:2.2.1-5build2)
Fast and lightweight SAT solver
minisat+ (1.0-4build1)
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5build2)
Transitional package for minisat
minisat2
virtueel pakket geboden door minisat
mipe (1.1-7)
Tools to store PCR-derived data
mira-assembler (4.9.6-4build5)
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-4build5)
extract of RFAM 12 rRNA database
mirtop (0.4.23-1)
annotate miRNAs with a standard mirna/isomir naming
missfits (2.8.0-2)
Basic maintenance and packaging tasks on FITS files
mitools (2.0.3-2build1)
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1+git.1.ee5d11f-4)
Machine Learning Demos (MLDemos) with Visualization
mlpack-bin (3.2.2-3)
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-6)
Find statistically significant patterns in sequences
mmseqs2 (9-d36de+ds-4)
ultra fast and sensitive protein search and clustering
mmseqs2-examples (9-d36de+ds-4)
optional resources for the mmseqs2 package
mocassin (2.02.73-2)
MOnte CArlo SimulationS of Ionised Nebulae
mocassin-benchmarks (2.02.73-2)
benchmarks for the photoionisation code MOCASSIN
mocassin-data (2.02.73-2)
atomic and optical data for the photoionisation code MOCASSIN
mocassin-examples (2.02.73-2)
Examples for the photoionisation code MOCASSIN
montage (6.0+dfsg-6build3)
Toolkit for assembling FITS images into mosaics
montage-gridtools (6.0+dfsg-6build3)
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3.1build4)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3.1build4)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6ubuntu4)
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.4-6build1)
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.4-6build1)
Multi-OpenRobot Simulation Engine
mothur (1.42.1-1build1)
sequence analysis suite for research on microbiota
mpb (1.9.0-2)
MIT Photonic-Bands
mpb-mpi (1.9.0-2)
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.9.0-2)
MIT Photonic-Bands initialisation files
mpgrafic (0.3.18-1build1)
MPI version of N-body initial conditions grafic package
mpqc (2.3.1-19)
Massively Parallel Quantum Chemistry Program
mpqc-support (2.3.1-19)
Massively Parallel Quantum Chemistry Program (support tools)
mpqc3 (0.0~git20170114-4.1)
Massively Parallel Quantum Chemistry Program
mpqc3-data (0.0~git20170114-4.1)
Massively Parallel Quantum Chemistry Program (data files)
mptp (0.2.4-1)
single-locus species delimitation
mrbayes-mpi (3.2.6+dfsg-2ubuntu2)
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.1.0-4build1)
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-3)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-3)
data files for MRIcron
mrs (6.0.5+dfsg-7build7)
Information Retrieval System for Biomedical databanks
mrtrix3 (3.0~rc3+git135-g2b8e7d0c2-5)
diffusion-weighted MRI white matter tractography
mseed2sac (2.3+ds1-1)
Convert MiniSEED time series data to SAC
msxpertsuite (5.8.6-2build1)
mass spectrometry software suite - metapackage
msxpertsuite-massxpert (5.8.6-2build1)
mass spectrometry software suite - massXpert
msxpertsuite-massxpert-data-doc (5.8.6-2build1)
mass spectrometry software suite - massXpert - data and doc
msxpertsuite-minexpert (5.8.6-2build1)
mass spectrometry software suite - mineXpert
msxpertsuite-minexpert-data-doc (5.8.6-2build1)
mass spectrometry software suite - mineXpert - data and doc
mummer (3.23+dfsg-4build1)
Efficient sequence alignment of full genomes
munipack (0.5.11-2.1build1)
Astronomical photometry software package
munipack-cli (0.5.11-2.1build1)
Command line interface of Munipack
munipack-core (0.5.11-2.1build1)
Core routines of Munipack
munipack-gui (0.5.11-2.1build1)
Graphical user interface of Munipack
murasaki (1.68.6-9build2)
homology detection tool across multiple large genomes
murasaki-common (1.68.6-9build2)
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-9build2)
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.1551-2build1)
Multiple alignment program of protein sequences
music-bin (1.1.16-1.1build2)
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.3-3build1)
multiple structural alignment of proteins
mustang-testdata (3.2.3-3build1)
multiple structural alignment of proteins, test data
nanook (1.33+dfsg-1)
pre- and post-alignment analysis of nanopore sequencing data
nanopolish (0.11.3-1build1)
consensus caller for nanopore sequencing data
nast-ier (20101212+dfsg1-3)
NAST-based DNA alignment tool
nautic (1.5-4build1)
computation of observer position in astro-navigation
ncbi-blast+ (2.9.0-2)
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.9.0-2)
NCBI Blast legacy call script
ncbi-cn3d (3.0.20170106+dfsg1-8)
3-dimensional viewer for biological molecules
ncbi-entrez-direct (12.0.20190816+ds-1)
NCBI Entrez utilities on the command line
ncbi-epcr (2.3.12-1-8build1)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20170106+dfsg1-8)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-5)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20170106+dfsg1-8)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106+dfsg1-8)
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.6.2-1build4)
NCAR Command Language and NCAR graphics
ncl-tools (2.1.21+git20190531.feceb81-2build1)
tools to deal with NEXUS files
ncoils (2002-7)
coiled coil secondary structure prediction
ncview (2.1.8+ds-3build2)
X11 visual browser for NetCDF format files
neat (2.2-1build1)
Nebular Empirical Analysis Tool
neobio (0.0.20030929-4)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.7.3-1)
Programs for reading and writing NetCDF files
neuron (7.6.3-1build4)
Simulation environment for computational models of neurons
neuron-dev (7.6.3-1build4)
Neuron simulation environment - Development files
nexus-tools (4.4.3-4)
NeXus scientific data file format - applications
nifti2dicom (0.4.11-1.1build1)
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-1.1build1)
data files for nifti2dicom
njplot (2.4-8)
phylogenetic tree drawing program
node-sphericalmercator (1.0.1-2)
Spherical Mercator projection support for NodeJS
node-srs (0.4.8+dfsg-4ubuntu2)
spatial reference library for Node.js
norsnet (1.0.17-6)
tool to identify unstructured loops in proteins
norsp (1.0.6-4)
predictor of non-regular secondary structure
numdiff (5.9.0-1)
Compare similar files with numeric fields
nutsqlite (2.0.6-1)
Dietary nutrition analysis software
nwchem (7.0.0-2)
High-performance computational chemistry software
nwchem-data (7.0.0-2)
High-performance computational chemistry software (data files)
oar-common (2.5.8-2)
OAR batch scheduler common package
oar-node (2.5.8-2)
OAR batch scheduler node package
oar-restful-api (2.5.8-2)
OAR web services
oar-server (2.5.8-2)
OAR batch scheduler server package
oar-server-mysql (2.5.8-2)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.8-2)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.8-2)
OAR batch scheduler user package
oar-user-mysql (2.5.8-2)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.8-2)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.8-2)
OAR batch scheduler visualization tool package
occt-draw (7.3.3+dfsg1-1build1)
Open CASCADE Technology command interpreter and graphical test system
oce-draw (0.18.3-1build1)
OpenCASCADE Community Edition CAE platform shared library
octave-bart (0.5.00-1)
Octave bindings for BART
octave-gdf (0.1.3-3ubuntu2)
IO library for the GDF -- Octave interface
octave-psychtoolbox-3 (3.0.16.20200130.dfsg1-1)
toolbox for vision research -- Octave bindings
octomap-tools (1.9.3+dfsg-2)
Tools for 3D occupancy grid mapping
octovis (1.9.3+dfsg-2)
Visualization tool for OctoMap
odil (0.11.0-1build1)
C++11 library for the DICOM standard (application)
odin (2.0.3-2build1)
develop, simulate and run magnetic resonance sequences
ogdi-bin (4.1.0+ds-1build1)
Open Geographic Datastore Interface Library -- utilities
ompl-demos (1.4.2+ds1-5)
Open Motion Planning Library (OMPL) demos
ompl-plannerarena (1.4.2+ds1-5)
Open Motion Planning Library (OMPL) plannerarena
openbabel (3.0.0+dfsg-3ubuntu3)
Chemical toolbox utilities (cli)
openbabel-gui (3.0.0+dfsg-3ubuntu3)
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1.1build2)
MPEG2 transport stream data generator and packet manipulator
openfoam (1906.191111+dfsg1-2build1)
Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
openfoam-examples (1906.191111+dfsg1-2build1)
Open source toolbox for Computational Fluid Dynamics (CFD) - examples
openmolcas (19.11-1build1)
Quantum chemistry software package
openmolcas-data (19.11-1build1)
Quantum chemistry software package (data files)
openms (2.4.0-real-1ubuntu4)
package for LC/MS data management and analysis
openms-common (2.4.0-real-1ubuntu4)
package for LC/MS data management and analysis - shared data
openmx (3.8.5+dfsg1-1build1)
package for nano-scale material simulations
openmx-data (3.8.5+dfsg1-1build1)
package for nano-scale material simulations (data)
openrocket (15.03.5)
Model Rocket Simulator
openturns-examples (1.14-1ubuntu3)
examples of OpenTURNS functionalities
openuniverse (1.0beta3.1+dfsg-6build1)
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-6build1)
3D Universe Simulator data files
optgeo (2.25-1)
simulator for geometrical optics
opticalraytracer (9.6-1)
Virtual lens/mirror design workshop
optimir (1.0-2)
Integrating genetic variations in miRNA alignment
orthanc (1.5.8+dfsg-2ubuntu6)
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (1.0+dfsg-2ubuntu10)
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-imagej (1.2+dfsg-1)
ImageJ plugin to import images from Orthanc
orthanc-mysql (2.0-2ubuntu5)
Plugins to use MySQL or MariaDB as a database back-end to Orthanc
orthanc-postgresql (3.2-1ubuntu4)
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (2.5-2ubuntu4)
Web viewer of medical images for Orthanc
orthanc-wsi (0.6-2ubuntu5)
Whole-slide imaging support for Orthanc (digital pathology)
oscar (1.1.0-testing-3-3build1)
Open Source CPAP Analysis Reporter (OSCAR)
ossim-core (2.9.1-2build1)
OSSIM core utilities
otb-bin (7.0.0+dfsg-2build3)
ORFEO Toolbox command line applications
otb-bin-qt (7.0.0+dfsg-2build3)
ORFEO Toolbox graphical user interface applications
otb-testdriver (7.0.0+dfsg-2build3)
ORFEO Toolbox library - OTBTestDriver
otf-trace (1.12.5+dfsg-6build1)
Open Trace Format support library - development files
packmol (20.010-1build1)
Initial configurations for Molecular Dynamics Simulations
paje.app (1.98-1build7)
generic visualization tool (Gantt chart and more)
pal2nal (14.1-2)
converts proteins to genomic DNA alignment
paml (4.9j+dfsg-1)
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-2build1)
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-4build1)
parallel command processing using OpenMP
paraview (5.7.0-4ubuntu9)
Parallel Visualization Application
parsinsert (1.04-5)
Parsimonious Insertion of unclassified sequences into phylogenetic trees
parsinsert-testdata (1.04-5)
Test data for parsinsert
parsnp (1.2.1+dfsg-1build1)
rapid core genome multi-alignment
patman (1.2.2+dfsg-6build1)
rapid alignment of short sequences to large databases
paw (1:2.14.04.dfsg.2-9.1build4)
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9.1build4)
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9.1build4)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9.1build4)
Physics Analysis Workstation examples and tests
pbbamtools (1.0.6+dfsg-2build1)
processing Pacific Biosciences binary alignment/map files
pbdagcon (0.3+git20180411.c14c422+dfsg-1build1)
sequence consensus using directed acyclic graphs
pbhoney (15.8.24+dfsg-4)
genomic structural variation discovery
pbjelly (15.8.24+dfsg-4)
genome assembly upgrading tool
pbsim (1.0.3+git20180330.e014b1d+dfsg-1build1)
simulator for PacBio sequencing reads
perlprimer (1.2.4-1)
Graphical design of primers for PCR
perlprimer-doc (1.2.4-1)
Tutorial to perlprimer
perm (0.4.0-4build1)
efficient mapping of short reads with periodic spaced seeds
pftools (3+dfsg-3)
build and search protein and DNA generalized profiles
phast (1.5+dfsg-1)
phylogenetic analysis with space/time models
phipack (0.0.20160614-3build1)
PHI test and other tests of recombination
phybin (0.3-3build3)
binning/clustering newick trees by topology
phylip (1:3.697+dfsg-1)
package of programs for inferring phylogenies
phylip-doc (1:3.697+dfsg-1)
package of programs for inferring phylogenies (documentation)
phylonium (1.2-1build1)
Fast and Accurate Estimation of Evolutionary Distances
phyml (3:3.3.20190909-1)
Phylogenetic estimation using Maximum Likelihood
physamp (1.1.0-1build1)
sample sequence alignment corresponding to phylogeny
phyutility (2.7.3+dfsg-2)
simple analyses or modifications on both phylogenetic trees and data matrices
phyx (1.01+ds-1build1)
UNIX-style phylogenetic analyses on trees and sequences
picard-tools (2.18.25+dfsg-2)
Command line tools to manipulate SAM and BAM files
picosat (965-1)
SAT solver with proof and core support
piler (0~20140707-2build1)
genomic repeat analysis
pilercr (1.06+dfsg-2build1)
software for finding CRISPR repeats
pilon (1.23+dfsg-1)
automated genome assembly improvement and variant detection tool
pirs (2.0.2+dfsg-8build1)
Profile based Illumina pair-end Reads Simulator
pirs-examples (2.0.2+dfsg-8build1)
profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles (2.0.2+dfsg-8build1)
profile basd Illumina pair-end Reads Simulator (profile data)
pkg-r-autopkgtest (20200104)
Script for the automatic testing of R packages
pktools (2.6.7.6+ds-2build2)
GDAL add-on tools to perform useful raster processing
placnet (1.03-3)
Plasmid Constellation Network project
planets (0.1.13-20)
Gravitation simulation of planetary bodies
plasmidseeker (1.0+dfsg-1)
identification of known plasmids from whole-genome sequencing reads
plast (2.3.2+dfsg-1build1)
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.2+dfsg-1build1)
Parallel Local Sequence Alignment Search Tool (example data)
plastimatch (1.8.0+dfsg.1-2build1)
medical image reconstruction and registration
plink (1.07+dfsg-3build1)
whole-genome association analysis toolset
plink1.9 (1.90~b6.16-200217-1)
whole-genome association analysis toolset
plink2 (2.00~a3-200217+dfsg-1)
whole-genome association analysis toolset
pluto-jpl-eph (0.0~git20180228-1.1build1)
command line handling of JPL ephemeres data
pluto-lunar (0.0~git20180825.e34c1d1-1build1)
routines for predictions of positions in solar system
pnetcdf-bin (1.12.1-1ubuntu2)
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-7)
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106+dfsg-3build1)
population genetic software
porechop (0.2.4+dfsg-1build2)
adapter trimmer for Oxford Nanopore reads
poretools (0.6.0+dfsg-4)
toolkit for nanopore nucleotide sequencing data
poretools-data (0.6.0+dfsg-4)
toolkit for nanopore nucleotide sequencing data -- sample datasets
pp-popularity-contest (1.0.6-4build1)
PredictProtein popularity contest
praat (6.1.09-1build1)
program for speech analysis and synthesis
prank (0.0.170427+dfsg-2build1)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-6)
prediction and analysis of protein nuclear localization signals
prime-phylo (1.0.11-8build1)
bayesian estimation of gene trees taking the species tree into account
primer3 (2.4.0-2)
tool to design flanking oligo nucleotides for DNA amplification
primer3-examples (2.4.0-2)
tool to design flanking oligo nucleotides for DNA amplification (examples)
proalign (0.603-4)
Probabilistic multiple alignment program
probabel (0.5.0+dfsg-3build1)
Toolset for Genome-Wide Association Analysis
probabel-examples (0.5.0+dfsg-3build1)
Example files for ProbABEL
probalign (1.4-8build1)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-12build1)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-12build1)
Extra programs from the probcons package
proda (1.0-12build1)
multiple alignment of protein sequences
prodigal (1:2.6.3-4)
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-6)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-5)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-6build1)
neural network architecture for profbval
profnet-chop (1.0.22-6build1)
neural network architecture for profchop
profnet-con (1.0.22-6build1)
neural network architecture for profcon
profnet-isis (1.0.22-6build1)
neural network architecture for profisis
profnet-md (1.0.22-6build1)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-6build1)
neural network architecture for norsnet
profnet-prof (1.0.22-6build1)
neural network architecture for profacc
profnet-snapfun (1.0.22-6build1)
neural network architecture for snapfun
profphd-net (1.0.22-6build1)
neural network architecture for profphd
profphd-utils (1.0.10-5build1)
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-8build1)
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713+dfsg-4build1)
multiple genome alignment algorithms
proj-bin (6.3.1-1)
Cartographic projection library (tools)
prokka (1.14.5+dfsg-2)
rapid annotation of prokaryotic genomes
prooftree (0.13-1build9)
proof-tree visualization for Proof General
proteinortho (6.0.14+dfsg-1)
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-3)
selection of best-fit models of protein evolution
pscan-chip (1.1-2build1)
ChIP-based identifcation of TF binding sites
pscan-chip-data (1.1-2build1)
auxiliary data for PScan-ChIP
pscan-tfbs (1.2.2-3build1)
search for transcription factor binding sites
psfex (3.17.1+dfsg-5build2)
Point Spread Function model extractor
psi3 (3.4.0-6ubuntu1)
Quantum Chemical Program Suite
psi4 (1:1.3.2-3build2)
Quantum Chemical Program Suite
psi4-data (1:1.3.2-3build2)
Quantum Chemical Program Suite (data files)
psortb (3.0.6+dfsg-2)
bacterial localization prediction tool
psychopy (2020.1.3+dfsg-2)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.16.20200130.dfsg1-1)
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.16.20200130.dfsg1-1)
toolbox for vision research -- arch-specific parts
purify (2.0.0-4build4)
Collection of routines for radio interferometric imaging
pyfai (0.19.0+dfsg1-1build1)
Fast Azimuthal Integration scripts
pyfr (1.5.0-3)
flux reconstruction in Python
pylang (0.0.4-0ubuntu3)
complete right sentence with random words generated.
pymca (5.5.4+dfsg-1build1)
Applications and toolkit for X-ray fluorescence analysis -- scripts
pymca-data (5.5.4+dfsg-1build1)
Architecture independent data files for PyMca
pymoctool (0.5.0-4)
Python Multi-Order Coverage maps tool for Virtual Observatory
pymol (2.3.0+dfsg-1build1)
Molecular Graphics System
pymol-data (2.3.0+dfsg-1build1)
data files for PyMOL
pythia8-data (8.1.86-1.2build1)
PYTHIA8 data files
python-drizzle-testdata (1.13.1-2build2)
Dithered image combination for Python (Test data)
python-escript-doc (5.5-5)
Documentation for Escript/Finley
python-nifti (0.20100607.1-4.1build1)
Python interface to the NIfTI I/O libraries
python-pyode (1.2.0-4+cvs20090320.3build2)
Python bindings for The Open Dynamics Engine
python3-airr (1.2.1-2)
Data Representation Standard library for antibody and TCR sequences
python3-alignlib (0.1.1+dfsg-1ubuntu2)
edit and Hamming distances for biological sequences
python3-amp (0.6.1-1build2)
Atomistic Machine-learning Package (python 3)
python3-escript (5.5-5)
Escript/Finley finite elements Python3 system (with OpenMP)
python3-escript-mpi (5.5-5)
Escript/Finley finite elements Python3 system (OpenMP + MPI)
python3-gfapy (1.0.0+dfsg-4build1)
flexible and extensible software library for handling sequence graphs
python3-gffutils (0.10.1-2)
Work with GFF and GTF files in a flexible database framework
python3-jupyter-sphinx (0.2.3-1)
Jupyter Sphinx Extension - Python3
python3-louvain (0.0+20181013git3fc1f575-1ubuntu1)
community graph analysis implementing Louvain method
python3-morse-simulator (1.4-6build1)
Multi-OpenRobot Simulation Engine
python3-noise (1.2.3-3)
Perlin noise for image generation
python3-py2bit (0.3.0-3build1)
access to 2bit files
python3-pybel (0.12.1-1)
Biological Expression Language
python3-pybigwig (0.3.17-1build2)
Python 3 module for quick access to bigBed and bigWig files
python3-pynlpl (1.2.9-1)
PyNLPl is a library for Natural Language Processing (Python 3 version)
python3-tinyalign (0.2-3)
numerical representation of differences between strings
pyzo (4.4.3-1.2)
interactive editor for scientific Python
q2templates (2019.10.0+dfsg-1)
Design template package for QIIME 2 Plugins
qcumber (1.0.14+dfsg-1)
quality control of genomic sequences
qfits-tools (6.2.0-8ubuntu2)
FITS manipulation tools
qfitsview (4.0+dfsg-2build1)
FITS file viewer based on DPUSER
qgis (3.10.4+dfsg-1ubuntu2)
Geographic Information System (GIS)
qgis-api-doc (3.10.4+dfsg-1ubuntu2)
QGIS API documentation
qgis-common (3.10.4+dfsg-1ubuntu2)
QGIS - architecture-independent data
qgis-plugin-grass (3.10.4+dfsg-1ubuntu2)
GRASS plugin for QGIS
qgis-plugin-grass-common (3.10.4+dfsg-1ubuntu2)
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (3.10.4+dfsg-1ubuntu2)
GRASS provider for QGIS
qgis-providers (3.10.4+dfsg-1ubuntu2)
collection of data providers to QGIS
qgis-providers-common (3.10.4+dfsg-1ubuntu2)
collection of data providers to QGIS - architecture-independent files
qgis-server (3.10.4+dfsg-1ubuntu2)
QGIS server providing various OGC services
qgis3-survex-import (1.2-1)
QGIS3 plugin to read survex 3d files, for cave surveying
qmapshack (1.14.0-1build2)
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3.1build1)
Quine McClusky Simplification Tool
qnifti2dicom (0.4.11-1.1build1)
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-4)
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-5build1)
Funcube Dongle controller
qtltools (1.2+dfsg-2build1)
Tool set for molecular QTL discovery and analysis
quantum-espresso (6.4.1-1build2)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (6.4.1-1build2)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
quorum (1.1.1-2build1)
QUality Optimized Reads of genomic sequences
qutemol (0.4.1~cvs20081111-13build1)
interactive visualization of macromolecules
r-cran-colorspace (1.4-1+dfsg-1)
GNU R Color Space Manipulation
r-cran-epibasix (1.5-1)
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.8.1.2-1)
GNU R package for population genetics
r-cran-haplo.stats (1.7.9-4)
GNU R package for haplotype analysis
r-cran-maptools (1:0.9-9+dfsg-1)
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.6.8-1)
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-randomforest (4.6-14-2)
GNU R package implementing the random forest classificator
r-cran-sdmtools (1.1-221.2-1)
Species Distribution Modelling Tools
r-cran-sp (1:1.4-0-1)
GNU R classes and methods for spatial data
r-cran-spc (1:0.6.3-1)
GNU R Statistical Process Control
r-cran-vcd (1:1.4-5-1)
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.8-4-1)
GNU R coerce data to LaTeX and HTML tables
racon (1.4.10-1build1)
consensus module for raw de novo DNA assembly of long uncorrected reads
radiant (2.7.1+dfsg-1)
explore hierarchical metagenomic data with zoomable pie charts
ragout (2.2+ds-1build2)
Reference-Assisted Genome Ordering UTility
ragout-examples (2.2+ds-1build2)
Reference-Assisted Genome Ordering UTility (example data)
rambo-k (1.21+dfsg-3)
Read Assignment Method Based On K-mers
rampler (1.1.1-1build1)
module for sampling genomic sequences
rapmap (0.15.0+dfsg-1)
rapid sensitive and accurate DNA read mapping via quasi-mapping
rapmap-dev (0.15.0+dfsg-1)
rapmap - rapid sensitive and accurate DNA read mapping (some headers)
rapmap-example-data (0.15.0+dfsg-1)
example data for rapmap - rapid sensitive and accurate DNA read mapping
rasmol (2.7.6.0-1build1)
visualization of biological macromolecules
rasmol-doc (2.7.6.0-1build1)
documentation for rasmol
rate4site (3.0.0-6build1)
detector of conserved amino-acid sites
rawtran (1.1-1build1)
RAW photo to FITS converter
raxml (8.2.12+dfsg-4)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-7build1)
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-7build1)
Scripts and XSL sheets for post-processing for ray
rdkit-data (201909.1-2ubuntu5)
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-4)
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-13)
Conversion between sequence formats
reapr (1.0.18+dfsg-5build1)
universal tool for genome assembly evaluation
refmac-dictionary (5.41-1)
dictionary for macromolecular refinement and model building
relion-bin (1.4+dfsg-4)
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.4+dfsg-4)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-4)
finds repeat families from biological sequences
reprof (1.0.1-7)
protein secondary structure and accessibility predictor
resfinder (3.2-1)
identify acquired antimicrobial resistance genes
resfinder-db (0.0+git20191001.149209d-1)
ResFinder database is a curated database of acquired resistance genes
resfinder-example (3.2-1)
identify acquired antimicrobial resistance genes (example data)
rna-star (2.7.3a+dfsg-1build2)
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-5)
Fast and effective prediction of microRNA/target duplexes
roary (3.13.0+dfsg-1)
high speed stand alone pan genome pipeline
rocs (4:19.12.3-0ubuntu1)
graph theory IDE
roguenarok (1.0-3)
versatile and scalable algorithm for rogue taxon identification
rsem (1.3.3+dfsg-1)
RNA-Seq by Expectation-Maximization
rtax (0.984-6)
Classification of sequence reads of 16S ribosomal RNA gene
ruby-getspg (1.14.1-5build2)
C library for crystal symmetry determination - Ruby bindings
ruby-rgfa (1.3.1+dfsg-1)
parse, edit and write GFA format graphs in Ruby
runcircos-gui (0.0+git20180828.97703b9-1build1)
GUI tool to run circos
sac2mseed (1.12+ds1-3)
Convert SAC waveform data to MiniSEED
saga (7.3.0+dfsg-3build5)
System for Automated Geoscientific Analyses
saga-common (7.3.0+dfsg-3build5)
SAGA GIS architecture independent files
saint (2.5.0+dfsg-3)
Significance Analysis of INTeractome
salmid (0.1.23-1)
rapid Kmer based Salmonella identifier from sequence data
salmon (0.12.0+ds1-1)
wicked-fast transcript quantification from RNA-seq data
samblaster (0.1.24-2build1)
marks duplicates, extracts discordant/split reads
samtools (1.10-3)
processing sequence alignments in SAM, BAM and CRAM formats
samtools-test (1.10-3)
test files for the samtools package
saods9 (8.1+repack-1)
Image display tool for astronomy
sasview (5.0.1-1build1)
Small Angle Scattering Analysis suite
sat4j (2.3.5-0.3)
Efficient library of SAT solvers in Java
savi (1.5.1-3)
satellite constellation visualisation
sbmltoolbox (4.1.0-4)
libsbml toolbox for octave and matlab
scamp (2.0.4+dfsg-1build2)
Compute astrometric and photometric solutions
science-distributedcomputing (1.12ubuntu1)
Debian Science Distributed Computing packages
science-electrophysiology (1.12ubuntu1)
Debian Science packages for Electrophysiology
science-highenergy-physics (1.12ubuntu1)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.12ubuntu1)
Debian Science High Energy Physics development packages
science-machine-learning (1.12ubuntu1)
Debian Science Machine Learning packages
science-nanoscale-physics (1.12ubuntu1)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.12ubuntu1)
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (1.12ubuntu1)
Debian Science packages for modeling of neural systems
science-physics-dev (1.12ubuntu1)
Debian Science Physics-dev packages
science-psychophysics (1.12ubuntu1)
Debian Science packages for Psychophysics
science-simulations (1.12ubuntu1)
Debian Science Simulation packages
scoary (1.6.16-2)
pangenome-wide association studies
scram (0.16.2-1build2)
Probabilistic Risk Analysis Tool
scram-gui (0.16.2-1build2)
SCRAM GUI front-end
scrm (1.7.3-1build1)
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-3)
speech recognition scoring toolkit
scythe (0.994+git20141017.20d3cff-2)
Bayesian adaptor trimmer for sequencing reads
sdaps (1.9.7-0.2ubuntu2)
scripts for data acquisition with paper-based surveys
sdrangelove (0.0.1.20150707-3build2)
Osmocom Software Defined Radio
seer (1.1.4-2build2)
genomic sequence element (kmer) enrichment analysis
segemehl (0.3.4-2build1)
short read mapping with gaps
segyio-bin (1.8.3-1build2)
SEG-Y read/write library for seismic processing (shell utilities)
sentencepiece (0.1.84-1build1)
Unsupervised text tokenizer and detokenizer
seq-gen (1.3.4-2)
simulate the evolution of nucleotide or amino acid sequences
seqmagick (0.8.0-1)
imagemagick-like frontend to Biopython SeqIO
seqprep (1.3.2-5)
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.3.2-5)
example data set for seqprep - only used for testing
seqtk (1.3-1)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.25.0+ds-2)
Dummy transitional package for name change
sga (0.10.15-5build1)
de novo genome assembler that uses string graphs
shapeit4 (4.1+dfsg-1build1)
fast and accurate method for estimation of haplotypes (phasing)
shelxle (1.0.1062-1)
graphical user interface for SHELXL
sibsim4 (0.20-4)
align expressed RNA sequences on a DNA template
sickle (1.33+git20150314.f3d6ae3-1)
windowed adaptive trimming tool for FASTQ files using quality
sigma-align (1.1.3-6)
Simple greedy multiple alignment of non-coding DNA sequences
silx (0.12.0+dfsg-1build1)
Toolbox for X-Ray data analysis - Executables
sim4 (0.0.20121010-5)
tool for aligning cDNA and genomic DNA
simgrid-java (3.24+dfsg-3)
Java bindings for the SimGrid Toolkit
simka (1.5.1-4build1)
comparative metagenomics method dedicated to NGS datasets
simkamin (1.5.1-4build1)
approximate comparative metagenomics method dedicated to NGS datasets
siril (0.9.12-2build3)
astronomical image processing tool
siril-common (0.9.12-2build3)
architecture-independent files for siril
skesa (2.3.0-2)
strategic Kmer extension for scrupulous assemblies
skewer (0.2.2-1build1)
post-processing of high-throughput DNA sequence reads
skycat (3.1.2+starlink1~b+dfsg-5build3)
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.117-2)
produce plots and drawings through Xfig's fig2dev in S-Lang
smalt (0.7.6-9)
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-9)
Sequence Mapping and Alignment Tool (examples)
smithwaterman (0.0+git20160702.2610e25-7build1)
determine similar regions between two strings or genomic sequences
snakemake (5.10.0-2)
pythonic workflow management system
snap (2013-11-29-9)
location of genes from DNA sequence with hidden markov model
snap-aligner (1.0~beta.18+dfsg-3build1)
Scalable Nucleotide Alignment Program
sniffles (1.0.11+ds-1build1)
structural variation caller using third-generation sequencing
snp-sites (2.5.1-1)
Binary code for the package snp-sites
snpomatic (1.0-4build1)
fast, stringent short-read mapping software
soapaligner (2.20-3)
aligner of short reads of next generation sequencers
soapdenovo (1.05-5)
short-read assembly method to build de novo draft assembly
soapdenovo2 (241+dfsg-3build1)
short-read assembly method to build de novo draft assembly
soapsnp (1.03-3build1)
resequencing utility that can assemble consensus sequence of genomes
sortmerna (2.1-4build1)
tool for filtering, mapping and OTU-picking NGS reads
source-extractor (2.25.0+ds-2)
Source extractor for astronomical images
spaced (1.2.0-201605+dfsg-1build1)
alignment-free sequence comparison using spaced words
spades (3.13.1+dfsg-2build2)
genome assembler for single-cell and isolates data sets
spaln (2.4.0+dfsg-2build1)
splicing-aware transcript-alignment to genomic DNA
spaln-data (2.4.0+dfsg-2build1)
splicing-aware transcript-alignment to genomic DNA (data)
spass (3.7-4)
automated theorem prover for first-order logic with equality
spatialite-bin (4.3.0-3build1)
Geospatial extension for SQLite - tools
spd (1.3.0-1ubuntu3)
Synchrotron image corrections and azimuthal integration
splash (2.9.1-1ubuntu1)
Visualisation tool for Smoothed Particle Hydrodynamics simulation
spoa (3.0.1-1build1)
SIMD partial order alignment tool
spview (2.0.0~beta2-2)
Spectrum Viewer
squizz (0.99d+dfsg-2)
Converter for genetic sequences and alignments
srst2 (0.2.0-7)
Short Read Sequence Typing for Bacterial Pathogens
ssake (4.0-3)
genomics application for assembling millions of very short DNA sequences
ssake-examples (4.0-3)
example data for SSAKE, a genomic assembler of short reads
sspace (2.1.1+dfsg-5)
scaffolding pre-assembled contigs after extension
ssw-align (1.1-9)
Smith-Waterman aligner based on libssw
stacks (2.41+dfsg-1build3)
pipeline for building loci from short-read DNA sequences
staden (2.0.0+b11-4build1)
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b11-4build1)
Architecture independent files for Staden
staden-io-lib-examples (1.14.11-6)
programs for manipulating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.11-6)
programs for manipulating DNA sequencing files
stardata-common (0.8build1)
Common framework to manage astronomy packages
starplot (0.95.5-8.3build1)
3-dimensional perspective star map viewer
starpu-examples (1.3.3+dfsg-2build1)
Task scheduler for heterogeneous multicore machines - exs
stellarium (0.19.3-1build1)
real-time photo-realistic sky generator
stellarium-data (0.19.3-1build1)
Stellarium data files
stiff (2.4.0-3)
convert scientific FITS images to the TIFF format
stilts (3.2-2)
Starlink Tables Infrastructure Library Tool Set
stimfit (0.16.0-1build2)
Program for viewing and analyzing electrophysiological data
stringtie (2.1.1+ds-2)
assemble short RNAseq reads to transcripts
subread (2.0.0+dfsg-1)
toolkit for processing next-gen sequencing data
subread-data (2.0.0+dfsg-1)
data files for subread package
suitename (0.3.070628-2)
categorize each suite in an RNA backbone
sumaclust (1.0.35-2)
fast and exact clustering of genomic sequences
sumatra (1.0.31-2)
fast and exact comparison and clustering of sequences
sumo (1.4.0+dfsg1-1)
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-2)
Supervised Ranking of Contigs in de novo Assemblies
survex (1.2.42-1build2)
cave surveying and mapping software
survex-aven (1.2.42-1build2)
sophisticated cave survey viewer for Survex
swarm (3.0.0+dfsg-2build1)
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-4)
Resample and co-add together FITS images
swarp
virtueel pakket geboden door suckless-tools
swe-basic-data (1.80.00.0002-1ubuntu2)
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
sweed (3.2.1+dfsg-1)
assessment of SNPs for their evolutionary advantage
syrthes (4.3.0-dfsg1-5)
Transient thermal simulations in complex solid geometries
syrthes-tests (4.3.0-dfsg1-5)
Test cases for SYRTHES
syrthes-tools (4.3.0-dfsg1-5)
Transient thermal simulations in complex solid geometries - tools
t-coffee (12.00.7fb08c2-4build1)
Multiple Sequence Alignment
t-coffee-examples (12.00.7fb08c2-4build1)
annotated examples for the use of T-Coffee
tabix (1.10.2-3)
generic indexer for TAB-delimited genome position files
tandem-mass (1:201702011-1build1)
mass spectrometry software for protein identification
tantan (22-1build1)
low complexity and tandem repeat masker for biosequences
tcd-utils (20061127-2build1)
convert Tide Constituent Database (TCD) files
tcl-fitstcl (2.4-4build1)
Tcl interface to FITS files
tcliis (8.1+repack-1)
Tcl IIS protocol package
terraintool (1.13-2)
Generates survex format terrain models from SRTM and ASTER data
therion (5.4.4ds1-5ubuntu1)
Cave surveying - 2D and 3D drawing software
therion-doc (5.4.4ds1-5ubuntu1)
Documentation for Therion Cave surveying software
therion-viewer (5.4.4ds1-5ubuntu1)
Cave surveying - 3D viewer for therion models
theseus (3.3.0-8)
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-8)
superimpose macromolecules using maximum likelihood (examples)
thesias (3.1.1-1)
Testing Haplotype Effects In Association Studies
tigr-glimmer (3.02b-2build1)
Gene detection in archea and bacteria
timbl (6.4.13-1build1)
Tilburg Memory Based Learner
timblserver (1.12-1build1)
Server extensions for Timbl
tksao (8.1+repack-1)
Tk widgets for astronomical imaging and data visualization
tm-align (20190822+dfsg-2build1)
structural alignment of proteins
tnseq-transit (3.0.2-1build1)
statistical calculations of essentiality of genes or genomic regions
topcat (4.7-2)
Tool for OPerations on Catalogues And Tables
tophat-recondition (1.4-1)
post-processor for TopHat unmapped reads
topp (2.4.0-real-1ubuntu4)
set of programs implementing The OpenMS Proteomic Pipeline
toppred (1.10-7)
transmembrane topology prediction
toulbar2 (1.0.0+dfsg3-2build1)
Exact combinatorial optimization for Graphical Models
toulbar2-doc (1.0.0+dfsg3-2build1)
Exact combinatorial optimization for Graphical Models - documentation
trace2dbest (3.0.1-1)
bulk submission of chromatogram data to dbEST
trace2dbest-doc (3.0.1-1)
Documentation and sample files for trace2dbest
tracetuner (3.0.6~beta+dfsg-2build1)
interpretation of DNA Sanger sequencing data
transcalc (0.14-6)
microwave and RF transmission line calculator
transdecoder (5.0.1-3)
find coding regions within RNA transcript sequences
transrate-tools (1.0.0-2build1)
helper for transrate
transtermhp (2.09-4build1)
find rho-independent transcription terminators in bacterial genomes
travis (190101-1build1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-11)
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-11)
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-11)
Reconstruction of phylogenetic trees by maximum likelihood (doc)
treeviewx (0.5.1+git20100823.7e4d0e9-2build1)
Displays and prints phylogenetic trees
trim-galore (0.6.5-1)
automate quality and adapter trimming for DNA sequencing
trimmomatic (0.39+dfsg-1)
flexible read trimming tool for Illumina NGS data
trinityrnaseq (2.6.6+dfsg-6build2)
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.6.6+dfsg-6build2)
RNA-Seq De novo Assembly common example and testing files
tunnelx (20170928-2)
Cave Survey drawing software
tvc (5.0.3+git20151221.80e144e+dfsg-3)
genetic variant caller for Ion Torrent sequencing platforms
twms (0.07z-1)
tiny web map service
ubertooth (2018.12.R1-4)
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2018.12.R1-4)
Firmware for Ubertooth
ubertooth-firmware-source (2018.12.R1-4)
Source code for the Ubertooth firmware
uc-echo (1.12-13)
error correction algorithm designed for short-reads from NGS
ucto (0.14-2build2)
Unicode Tokenizer
uctodata (0.8-2)
Data files for Ucto
uhd-host (3.15.0.0-2build5)
universal hardware driver for Ettus Research products - host apps
unicycler (0.4.8+dfsg-2build1)
hybrid assembly pipeline for bacterial genomes
unicycler-data (0.4.8+dfsg-2build1)
hybrid assembly pipeline for bacterial genomes (data package)
units-filter (3.9-1build1)
Parser for expressions concerning physical values
v-sim (3.7.2-8build1)
Visualize atomic structures
v-sim-common (3.7.2-8build1)
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-8build1)
Plugins for V_Sim (a 3D visualization package)
varna (3-93+ds-2)
Visualization Applet for RNA
vcftools (0.1.16-1build1)
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-7)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-7)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-7)
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-7)
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.6-2)
automatically optimise Velvet do novo assembly parameters
veusz (3.0.1-1ubuntu4)
2D and 3D scientific plotting application with graphical interface
vg (1.22.0+ds-1)
tools for working with genome variation graphs
vg-docs (1.22.0+ds-1)
tools for working with genome variation graphs -- docs
viewmol (2.4.1-26ubuntu1)
graphical front end for computational chemistry programs
virulencefinder (2.0.3+git20190809.dde157a-1)
identify virulence genes in total or partial sequenced isolates of bacteria
virulencefinder-examples (2.0.3+git20190809.dde157a-1)
example data for virulencefinder
visp-images-data (3.3.0-1)
visual servoing library - dataset reference files
vistrails (3.0~git+9dc22bd-2)
Science visualisation workflow toolkit
vmatch (2.3.1+dfsg-6)
large scale sequence analysis software
voro++ (0.4.6+dfsg1-3build1)
library for the computation of the Voronoi diagram
voro++-examples (0.4.6+dfsg1-3build1)
library for the computation of the Voronoi diagram (examples)
voronota (1.21.2744-1build1)
Voronoi diagram-based tool to find atom contacts
votca-csg (1.6~rc1-2build1)
VOTCA's coarse-graining engine
votca-csg-scripts (1.6~rc1-2build1)
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.6~rc1-2build1)
VOTCA's coarse-graining tutorials
votca-tools (1.6~rc1-3build1)
VOTCA's tools library, helper binaries
vowpal-wabbit (8.6.1.dfsg1-1build2)
fast and scalable online machine learning algorithm
vrrender (19.0.0-5ubuntu4)
DICOM viewer
vsearch (2.14.1-3build1)
tool for processing metagenomic sequences
wannier90 (3.0.0+ds-4build1)
Maximally Localized Wannier Functions - executables
wannier90-data (3.0.0+ds-4build1)
Maximally Localized Wannier Functions - documentation and examples
wcslib-tools (7.1+ds-2)
Command line tools utilizing wcslib
wcstools (3.9.5-3)
Handle the WCS of a FITS image
weightwatcher (1.12+dfsg-1)
Combine maps and polygon data for astronomical image processing
weka (3.6.14-1)
Machine learning algorithms for data mining tasks
wham-align (0.1.5-2build1)
Wisconsin's High-Throughput Alignment Method
wigeon (20101212+dfsg1-3)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-21)
comparison of biopolymers, like DNA and protein sequences
wsclean (2.8-1build2)
Fast generic widefield interferometric imager
wxastrocapture (1.8.1+git20140821.796e1a1+dfsg-1)
Windows linuX Astronomy Capture
xbs (0-10build1)
3-d models and movies of molecules
xcas (1.5.0.85+dfsg1-3)
Computer Algebra System - console and graphical calculator
xcrysden (1.6.2-3build1)
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.6.2-3build1)
Crystalline and Molecular Structure Visualizer (Data Files)
xfoil (6.99.dfsg+1-1build1)
program for the design and analysis of subsonic airfoils
xmakemol (5.16-9)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-9)
program for visualizing atomic and molecular systems (OpenGL)
xpa-tools (2.1.19-1)
Tools for seamless communication between Unix programs
xplot (1.19-9build2)
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-4)
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1build1)
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13.2-1build2)
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xyscan (4.30-2build2)
data thief for scientists
yade (2020.01a-6build2)
Platform for discrete element modeling
yagv (0.4~20171211.r234ef16+dfsg-1)
yet another G-code viewer
yaha (0.1.83-1build1)
find split-read mappings on single-end queries
yorick-av (0.0.5-1build1)
write movies from Yorick in various formats
yorick-full (2.2.04+dfsg1+full)
full installation of the Yorick interpreter and add-ons
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.4.4-3)
General relativistic geodesic integration for the Yorick language
yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2)
optical interferometry image reconstruction within Yorick
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-10)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-10)
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-10)
Message Passing Yorick (OpenMPI build)
yorick-svipc (0.16-5build1)
interprocess communication (shared memory...) for Yorick
yorick-ygsl (1.2.1-1build1)
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1)
nonequispaced fast Fourier transform for Yorick
z3 (4.8.7-4build1)
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-6)
Finite Element Analysis Program - runtime
zalign (0.9.1-4build1)
parallel local alignment of biological sequences
zegrapher (3.0.2-1build1)
plotting mathematical functions and sequences on the plane
zimpl (3.3.6-2)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor