[ Kaynak: gubbins ]
Paket: gubbins (2.3.5-1)
gubbins için bağlantılar
Trisquel Kaynakları:
gubbins Kaynak Paketini İndir:
Geliştirici:
Original Maintainers:
- Debian Med Packaging Team (Posta Arşivi)
- Andreas Tille
- Aidan Delaney
Dış Kaynaklar:
- Ana Sayfa [sanger-pathogens.github.io]
Benzer paketler:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
gubbins ile İlgili Diğer Paketler
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
gubbins indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 44,3 kB | 181 kB | [dosya listesi] |
| armhf | 39,0 kB | 151 kB | [dosya listesi] |