[ Источник: gubbins ]
Пакет: gubbins (2.3.5-1)
Ссылки для gubbins
Ресурсы Trisquel:
Исходный код gubbins:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Andreas Tille
- Aidan Delaney
Внешние ресурсы:
- Сайт [sanger-pathogens.github.io]
Подобные пакеты:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Другие пакеты, относящиеся к gubbins
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Загрузка gubbins
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 44,3 Кб | 181 Кб | [список файлов] |
| armhf | 39,0 Кб | 151 Кб | [список файлов] |