[ 源代码: gubbins ]
软件包: gubbins (2.3.5-1)
gubbins 的相关链接
Trisquel 的资源:
下载源码包 gubbins:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Aidan Delaney
外部的资源:
- 主页 [sanger-pathogens.github.io]
相似软件包:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
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