[ Paquet source : gubbins ]
Paquet : gubbins (2.3.5-1)
Liens pour gubbins
Ressources Trisquel :
Télécharger le paquet source gubbins :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
- Aidan Delaney
Ressources externes :
- Page d'accueil [sanger-pathogens.github.io]
Paquets similaires :
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Autres paquets associés à gubbins
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger gubbins
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 44,3 ko | 181 ko | [liste des fichiers] |
| armhf | 39,0 ko | 151 ko | [liste des fichiers] |