Skip to content
Sections
>> Trisquel >> Paketit >> aramo >> science >> srst2
etiona  ] [  nabia  ] [  aramo  ]
[ Source: srst2  ]

Paketti: srst2 (0.2.0-9)

Links for srst2

srst2

Trisquel-palvelut:

Imuroi lähdekoodipaketti srst2:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Étienne Mollier

External Resources:

Samankaltaisia paketteja:

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Muut pakettiin srst2 liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: cd-hit
    suite of programs designed to quickly group sequences
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • rec: python3-rpy2
    Python3 interface to the GNU R language and environment (version 2)
    myös näennäispaketti, jonka toteuttaa python3-rpy2

Imuroi srst2

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 61.2 kt254 kt [tiedostoluettelo]
arm64 61.2 kt254 kt [tiedostoluettelo]
ppc64el 61.2 kt254 kt [tiedostoluettelo]