[ Source: bowtie2 ]
Paketti: bowtie2 (2.4.4-1)
Links for bowtie2
Trisquel-palvelut:
Imuroi lähdekoodipaketti bowtie2:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Alexandre Mestiashvili
- Andreas Tille
External Resources:
- Kotisivu [bowtie-bio.sourceforge.net]
Samankaltaisia paketteja:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Muut pakettiin bowtie2 liittyvät paketit
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ei amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64]
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- sug: bowtie2-examples
- Examples for bowtie2
Imuroi bowtie2
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 1,141.3 kt | 3647 kt | [tiedostoluettelo] |
| arm64 | 1,178.2 kt | 3143 kt | [tiedostoluettelo] |
| ppc64el | 1,324.7 kt | 3931 kt | [tiedostoluettelo] |