[ Källkod: bowtie2 ]
Paket: bowtie2 (2.4.4-1)
Länkar för bowtie2
Trisquelresurser:
Hämta källkodspaketet bowtie2:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Alexandre Mestiashvili
- Andreas Tille
Externa resurser:
- Hemsida [bowtie-bio.sourceforge.net]
Liknande paket:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Andra paket besläktade med bowtie2
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ej amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64]
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- sug: bowtie2-examples
- Examples for bowtie2
Hämta bowtie2
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 1.141,3 kbyte | 3647 kbyte | [filförteckning] |
| arm64 | 1.178,2 kbyte | 3143 kbyte | [filförteckning] |
| ppc64el | 1.324,7 kbyte | 3931 kbyte | [filförteckning] |