[ aramo ]
[ Source: ngmlr ]
Package: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2)
Links for ngmlr
Trisquel Resources:
Download Source Package ngmlr:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Other Packages Related to ngmlr
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [not armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download ngmlr
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 692.7 kB | 1164 kB | [list of files] |
| arm64 | 683.9 kB | 1128 kB | [list of files] |
| armhf | 665.9 kB | 1007 kB | [list of files] |
| ppc64el | 701.7 kB | 1236 kB | [list of files] |