[ aramo ]
[ Bron: ngmlr ]
Pakket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2)
Verwijzigingen voor ngmlr
Trisquel bronnen:
Het bronpakket ngmlr downloaden:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Nilesh Patra
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Andere aan ngmlr gerelateerde pakketten
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1) [niet armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime