[ aramo ]
[ Källkod: ngmlr ]
Paket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2)
Länkar för ngmlr
Trisquelresurser:
Hämta källkodspaketet ngmlr:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Nilesh Patra
Externa resurser:
- Hemsida [github.com]
Liknande paket:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Andra paket besläktade med ngmlr
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1) [ej armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Hämta ngmlr
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 692,7 kbyte | 1164 kbyte | [filförteckning] |
| arm64 | 683,9 kbyte | 1128 kbyte | [filförteckning] |
| armhf | 665,9 kbyte | 1007 kbyte | [filförteckning] |
| ppc64el | 701,7 kbyte | 1236 kbyte | [filförteckning] |