[ aramo ]
[ Quellcode: ngmlr ]
Paket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2)
Links für ngmlr
Trisquel-Ressourcen:
Quellcode-Paket ngmlr herunterladen:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Nilesh Patra
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Andere Pakete mit Bezug zu ngmlr
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [nicht armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
ngmlr herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 692,7 kB | 1164 kB | [Liste der Dateien] |
| arm64 | 683,9 kB | 1128 kB | [Liste der Dateien] |
| armhf | 665,9 kB | 1007 kB | [Liste der Dateien] |
| ppc64el | 701,7 kB | 1236 kB | [Liste der Dateien] |