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Paket: hhsuite (3.3.0+ds-6)

hhsuite için bağlantılar

hhsuite

Trisquel Kaynakları:

hhsuite Kaynak Paketini İndir:

Geliştirici:

Original Maintainers:

  • Debian Med Packaging Team (Posta Arşivi)
  • Laszlo Kajan
  • Andreas Tille
  • Sascha Steinbiss

Dış Kaynaklar:

Benzer paketler:

sensitive protein sequence searching based on HMM-HMM alignment

HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

This package contains HHsearch and HHblits among other programs and utilities.

HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.

HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.

hhsuite ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: hhsuite-data (= 3.3.0+ds-6)
    sensitive protein sequence searching based on HMM-HMM alignment (data)
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)

hhsuite indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 12.928,0 kB455621 kB [dosya listesi]
arm64 5.735,7 kB75812 kB [dosya listesi]
armhf 5.741,2 kB75371 kB [dosya listesi]
ppc64el 5.792,0 kB78200 kB [dosya listesi]