Пакет: hhsuite (3.3.0+ds-6)
Ссылки для hhsuite
Ресурсы Trisquel:
Исходный код hhsuite:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Laszlo Kajan
- Andreas Tille
- Sascha Steinbiss
Внешние ресурсы:
- Сайт [toolkit.tuebingen.mpg.de]
Подобные пакеты:
sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
This package contains HHsearch and HHblits among other programs and utilities.
HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.
HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.
Другие пакеты, относящиеся к hhsuite
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- dep: hhsuite-data (= 3.3.0+ds-6)
- sensitive protein sequence searching based on HMM-HMM alignment (data)
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
Загрузка hhsuite
Архитектура | Размер пакета | В установленном виде | Файлы |
---|---|---|---|
amd64 | 12 928,0 Кб | 455621 Кб | [список файлов] |
arm64 | 5 735,7 Кб | 75812 Кб | [список файлов] |
armhf | 5 741,2 Кб | 75371 Кб | [список файлов] |
ppc64el | 5 792,0 Кб | 78200 Кб | [список файлов] |