Paquet : hhsuite (3.3.0+ds-6)
Liens pour hhsuite
Ressources Trisquel :
Télécharger le paquet source hhsuite :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Laszlo Kajan
- Andreas Tille
- Sascha Steinbiss
Ressources externes :
- Page d'accueil [toolkit.tuebingen.mpg.de]
Paquets similaires :
sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
This package contains HHsearch and HHblits among other programs and utilities.
HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.
HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.
Autres paquets associés à hhsuite
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- dep: hhsuite-data (= 3.3.0+ds-6)
- sensitive protein sequence searching based on HMM-HMM alignment (data)
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
Télécharger hhsuite
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 12 928,0 ko | 455621 ko | [liste des fichiers] |
| arm64 | 5 735,7 ko | 75812 ko | [liste des fichiers] |
| armhf | 5 741,2 ko | 75371 ko | [liste des fichiers] |
| ppc64el | 5 792,0 ko | 78200 ko | [liste des fichiers] |