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[ Källkod: unicycler  ]

Paket: unicycler (0.4.8+dfsg-2build1)

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Andra paket besläktade med unicycler

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  • rekommenderar
  • föreslår
  • dep: bcftools
    genomic variant calling and manipulation of VCF/BCF files
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: miniasm
    ultrafast de novo assembler for long noisy DNA sequencing reads
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: pilon
    automated genome assembly improvement and variant detection tool
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (>= 3~)
  • dep: python3-setuptools
    Python3 Distutils Enhancements
  • dep: racon
    consensus module for raw de novo DNA assembly of long uncorrected reads
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: spades (>= 3.13.1)
    genome assembler for single-cell and isolates data sets
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: unicycler-data
    hybrid assembly pipeline for bacterial genomes (data package)

Hämta unicycler

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 855,4 kbyte3504 kbyte [filförteckning]