[ nabia ]
[ aramo ]
[ Paquet source : unicycler ]
Paquet : unicycler (0.4.8+dfsg-2build1)
Liens pour unicycler
Ressources Trisquel :
Télécharger le paquet source unicycler :
- [unicycler_0.4.8+dfsg-2build1.dsc]
- [unicycler_0.4.8+dfsg.orig.tar.xz]
- [unicycler_0.4.8+dfsg-2build1.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
- Liubov Chuprikova
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
Autres paquets associés à unicycler
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- dep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: miniasm
- ultrafast de novo assembler for long noisy DNA sequencing reads
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: pilon
- automated genome assembly improvement and variant detection tool
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-setuptools
- Python3 Distutils Enhancements
-
- dep: racon
- consensus module for raw de novo DNA assembly of long uncorrected reads
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: spades (>= 3.13.1)
- genome assembler for single-cell and isolates data sets
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: unicycler-data
- hybrid assembly pipeline for bacterial genomes (data package)
Télécharger unicycler
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 855,4 ko | 3504 ko | [liste des fichiers] |