[ ソース: circlator ]
パッケージ: circlator (1.5.5-1)
circlator に関するリンク
Trisquel の資源:
circlator ソースパッケージをダウンロード:
メンテナ:
Original Maintainers:
- Debian Med Packaging Team (メールアーカイブ)
- Afif Elghraoui
外部の資源:
- ホームページ [sanger-pathogens.github.io]
類似のパッケージ:
circularize genome assemblies
Circlator is a tool to automate assembly circularization for bacterial and small eukaryotic genomes and produce accurate linear representations of circular sequences.
その他の circlator 関連パッケージ
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- dep: bwa (>= 0.7.12)
- Burrows-Wheeler Aligner
-
- dep: fastaq (>= 3.12.1)
- FASTA and FASTQ file manipulation tools
-
- dep: mummer
- Efficient sequence alignment of full genomes
-
- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-openpyxl
- Python 3 module to read/write OpenXML xlsx/xlsm files
-
- dep: python3-pymummer (>= 0.9.0)
- Python 3 interface to MUMmer
-
- dep: python3-pysam (>= 0.8.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: samtools
- processing sequence alignments in SAM and BAM formats
-
- dep: spades
- genome assembler for single-cell and isolates data sets
-
- sug: canu
- single molecule sequence assembler for genomes