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Package: bitseq (0.7.5+dfsg-6)

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Other Packages Related to bitseq

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.4.4) [ppc64el]
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [arm64]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

Download bitseq

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 358.0 kB1507 kB [list of files]
arm64 335.9 kB1291 kB [list of files]
armhf 329.0 kB1154 kB [list of files]
ppc64el 390.7 kB2087 kB [list of files]