[ Source: samtools ]
Package: samtools (1.13-4)
Links for samtools
Trisquel Resources:
Download Source Package samtools:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Charles Plessy
- Andreas Tille
- Étienne Mollier
External Resources:
- Homepage [www.htslib.org]
Similar packages:
processing sequence alignments in SAM, BAM and CRAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.
Other Packages Related to samtools
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libhts3 (>= 1.13)
- C library for high-throughput sequencing data formats
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- dep: libncurses6 (>= 6)
- shared libraries for terminal handling
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- dep: libtinfo6 (>= 6)
- shared low-level terminfo library for terminal handling
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- dep: zlib1g (>= 1:1.1.4) [not armhf]
- compression library - runtime
- dep: zlib1g (>= 1:1.2.3.3) [armhf]
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- sug: cwltool
- Common Workflow Language reference implementation
Download samtools
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 507.6 kB | 1155 kB | [list of files] |
| arm64 | 506.2 kB | 1095 kB | [list of files] |
| armhf | 525.8 kB | 1016 kB | [list of files] |
| ppc64el | 572.7 kB | 1687 kB | [list of files] |