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[ Quellcode: tophat ]
Paket: tophat (2.1.1+dfsg1-1)
Links für tophat
Trisquel-Ressourcen:
Quellcode-Paket tophat herunterladen:
Betreuer:
Original Maintainers:
- Debian Med Packaging Team (E-Mail-Archiv)
- Carlos Borroto
- Alexandre Mestiashvili
- Andreas Tille
Externe Ressourcen:
- Homepage [ccb.jhu.edu]
Ähnliche Pakete:
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
Andere Pakete mit Bezug zu tophat
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- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
-
- dep: libboost-thread1.65.1
- portable C++ multi-threading
-
- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: samtools (>= 1.5)
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
-
- sug: cufflinks
- Paket nicht verfügbar
tophat herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| amd64 | 659,8 kB | 3807 kB | [Liste der Dateien] |