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[ 源代码: tophat  ]

软件包: tophat (2.1.1+dfsg1-1)

tophat 的相关链接

tophat

Trisquel 的资源:

下载源码包 tophat:

维护者:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Carlos Borroto
  • Alexandre Mestiashvili
  • Andreas Tille

外部的资源:

相似软件包:

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

其他与 tophat 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
    或者 bowtie
    Ultrafast memory-efficient short read aligner
  • dep: libboost-system1.65.1
    Operating system (e.g. diagnostics support) library
  • dep: libboost-thread1.65.1
    portable C++ multi-threading
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: samtools (>= 1.5)
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: cufflinks
    软件包暂时不可用

下载 tophat

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 659.8 kB3807 kB [文件列表]