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Пакунок: tophat (2.1.1+dfsg1-1)

Links for tophat

tophat

Trisquel Resources:

Download Source Package tophat:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Carlos Borroto
  • Alexandre Mestiashvili
  • Andreas Tille

External Resources:

Similar packages:

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Інші пакунки пов'язані з tophat

  • depends
  • recommends
  • suggests
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
    or bowtie
    Ultrafast memory-efficient short read aligner
  • dep: libboost-system1.65.1
    Operating system (e.g. diagnostics support) library
  • dep: libboost-thread1.65.1
    portable C++ multi-threading
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: samtools (>= 1.5)
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • sug: cufflinks
    Пакунок недоступний

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