Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> pscan-tfbs
nabia  ] [  aramo  ]
[ Source: pscan-tfbs  ]

Package: pscan-tfbs (1.2.2-4build1)

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Other Packages Related to pscan-tfbs

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgsl27 (>= 2.7.1)
    GNU Scientific Library (GSL) -- library package
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3

Download pscan-tfbs

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 75.0 kB196 kB [list of files]
arm64 70.7 kB164 kB [list of files]
armhf 64.9 kB123 kB [list of files]
ppc64el 90.3 kB228 kB [list of files]