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[ 源代码: pscan-tfbs  ]

软件包: pscan-tfbs (1.2.2-4build1)

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

其他与 pscan-tfbs 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [除 armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgsl27 (>= 2.7.1)
    GNU Scientific Library (GSL) -- library package
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3

下载 pscan-tfbs

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 75.0 kB196 kB [文件列表]
arm64 70.7 kB164 kB [文件列表]
armhf 64.9 kB123 kB [文件列表]
ppc64el 90.3 kB228 kB [文件列表]