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Paquet : pscan-tfbs (1.2.2-4build1)

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 75,0 ko196 ko [liste des fichiers]
arm64 70,7 ko164 ko [liste des fichiers]
armhf 64,9 ko123 ko [liste des fichiers]
ppc64el 90,3 ko228 ko [liste des fichiers]