软件包: jellyfish (2.2.8-3build1)
jellyfish 的相关链接
Trisquel 的资源:
下载源码包 jellyfish:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
外部的资源:
- 主页 [www.cbcb.umd.edu]
相似软件包:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
其他与 jellyfish 有关的软件包
|
|
|
-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libjellyfish-2.0-2 (= 2.2.8-3build1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3