Pakiet: jellyfish (2.2.8-3build1)
Odnośniki dla jellyfish
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego jellyfish:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Zasoby zewnętrzne:
- Strona internetowa [www.cbcb.umd.edu]
Podobne pakiety:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Inne pakiety związane z jellyfish
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-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libjellyfish-2.0-2 (= 2.2.8-3build1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Pobieranie jellyfish
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 349,3 KiB | 606 KiB | [lista plików] |