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[ Kaynak: bio-tradis  ]

Paket: bio-tradis (1.4.5+dfsg2-1)

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

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  • dep: samtools
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  • dep: smalt
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  • dep: tabix
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  • sug: artemis
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  • sug: r-bioc-edger
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