Skip to content
Sections
>> Trisquel >> Paketit >> nabia >> perl >> bio-tradis
[  etiona  ] [  nabia  ] [  aramo  ]
[ Source: bio-tradis  ]

Paketti: bio-tradis (1.4.5+dfsg2-1)

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

Muut pakettiin bio-tradis liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libexception-class-perl
    module that allows you to declare real exception classes in Perl
  • dep: libmoose-perl
    modern Perl object system framework
  • dep: libtext-csv-perl
    comma-separated values manipulator (using XS or PurePerl)
  • dep: libtry-tiny-perl
    module providing minimalistic try/catch
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-getopt
    GNU R package providing command-line parsing functionality
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: smalt
    Sequence Mapping and Alignment Tool
  • dep: tabix
    generic indexer for TAB-delimited genome position files
  • sug: artemis
    genome browser and annotation tool
  • sug: r-bioc-edger
    Paketti ei saatavilla

Imuroi bio-tradis

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
all 82.0 kt242 kt [tiedostoluettelo]