Paket: freecontact (1.0.21-6build2)
freecontact için bağlantılar
Trisquel Kaynakları:
freecontact Kaynak Paketini İndir:
- [freecontact_1.0.21-6build2.dsc]
- [freecontact_1.0.21.orig.tar.xz]
- [freecontact_1.0.21-6build2.debian.tar.xz]
Geliştirici:
Original Maintainers:
- Debian Med Packaging Team (Posta Arşivi)
- Laszlo Kajan
- Andreas Tille
Dış Kaynaklar:
- Ana Sayfa [rostlab.org]
Benzer paketler:
fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the command line tool freecontact(1).
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freecontact indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 333,6 kB | 1630 kB | [dosya listesi] |
| i386 | 344,7 kB | 1693 kB | [dosya listesi] |