Пакет: freecontact (1.0.21-6build2)
Връзки за freecontact
Ресурси за Trisquel:
Изтегляне на пакет-източник freecontact.
- [freecontact_1.0.21-6build2.dsc]
- [freecontact_1.0.21.orig.tar.xz]
- [freecontact_1.0.21-6build2.debian.tar.xz]
Отговорник:
Original Maintainers:
- Debian Med Packaging Team (Пощенски архив)
- Laszlo Kajan
- Andreas Tille
Външни препратки:
- Начална страница [rostlab.org]
Подобни пакети:
fast protein contact predictor
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the command line tool freecontact(1).
Други пакети, свързани с freecontact
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- dep: libc6 (>= 2.14) [amd64]
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също и виртуален пакет, предлаган от libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libfreecontact0v5
- fast protein contact predictor library
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libxerces-c3.2
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: bash-completion
- programmable completion for the bash shell
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- sug: hhsuite
- sensitive protein sequence searching based on HMM-HMM alignment
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- sug: hmmer
- profile hidden Markov models for protein sequence analysis
Изтегляне на freecontact
| Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
|---|---|---|---|
| amd64 | 333,6 кБ | 1630 кБ | [списък на файловете] |
| i386 | 344,7 кБ | 1693 кБ | [списък на файловете] |