[ Källkod: stacks ]
Paket: stacks (2.41+dfsg-1build3)
Länkar för stacks
Trisquelresurser:
Hämta källkodspaketet stacks:
- [stacks_2.41+dfsg-1build3.dsc]
- [stacks_2.41+dfsg.orig.tar.xz]
- [stacks_2.41+dfsg-1build3.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Tim Booth
- Andreas Tille
Externa resurser:
- Hemsida [creskolab.uoregon.edu]
Liknande paket:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Andra paket besläktade med stacks
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
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- rec: python3
- interactive high-level object-oriented language (default python3 version)
Hämta stacks
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 987,7 kbyte | 5385 kbyte | [filförteckning] |
| armhf | 833,8 kbyte | 3144 kbyte | [filförteckning] |