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[ Paquet source : stacks  ]

Paquet : stacks (2.41+dfsg-1build3)

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

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  • dep: libc6 (>= 2.29)
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  • dep: libdbi-perl
    Perl Database Interface (DBI)
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhts3 (>= 1.10)
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  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 987,7 ko5385 ko [liste des fichiers]
armhf 833,8 ko3144 ko [liste des fichiers]