[ nabia ]
[ aramo ]
[ Bron: biobambam2 ]
Pakket: biobambam2 (2.0.95-1)
Verwijzigingen voor biobambam2
Trisquel bronnen:
Het bronpakket biobambam2 downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Andreas Tille
Externe bronnen:
- Homepage [gitlab.com]
Vergelijkbare pakketten:
tools for early stage alignment file processing
This package contains some tools for processing BAM files including
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
Andere aan biobambam2 gerelateerde pakketten
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc1 (>= 1:3.4) [amd64]
- GCC support library (dependency package)
- dep: libgcc1 (>= 1:3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libmaus2-2 (>= 2.0.611)
- collection of data structures and algorithms for biobambam
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3