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Пакет: biobambam2 (2.0.95-1)

tools for early stage alignment file processing

This package contains some tools for processing BAM files including 

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Другие пакеты, относящиеся к biobambam2

  • зависимости
  • рекомендации
  • предложения
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: libgcc1 (>= 1:3.4) [amd64]
    GCC support library (dependency package)
    dep: libgcc1 (>= 1:3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libmaus2-2 (>= 2.0.611)
    collection of data structures and algorithms for biobambam
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3

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