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[ Source: bio-vcf ]
Package: bio-vcf (0.9.5-3)
Links for bio-vcf
Trisquel Resources:
Download Source Package bio-vcf:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
domain specific language (DSL) for processing the VCF format
Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g.
sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.
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Download bio-vcf
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 29.2 kB | 141 kB | [list of files] |