Paket: tophat-recondition (1.4-3)

Links für tophat-recondition

Trisquel-Ressourcen:

Quellcode-Paket tophat-recondition herunterladen:

Betreuer:

Debian Med Packaging Team (E-Mail-Archiv)

Original Maintainers:

Debian Med Packaging Team (E-Mail-Archiv)
Steffen Moeller
Michael R. Crusoe

Externe Ressourcen:

Homepage [github.com]

post-processor for TopHat unmapped reads

tophat-recondition is a post-processor for TopHat unmapped reads (contained in unmapped.bam), making them compatible with downstream tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It also works around bugs in TopHat:

 * the "mate is unmapped" SAM flag is not set on any reads in the
   unmapped.bam file (TopHat issue #3)
 * the mapped mate of an unmapped read can be absent from
   accepted_hits.bam, creating a mismatch between the file and the unmapped
   read's flags (TopHat issue #16)

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dep: python3

interactive high-level object-oriented language (default python3 version)

sug: tophat2

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