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[ Source: zalign  ]

Package: zalign (0.9.1-5)

Links for zalign

zalign

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Download Source Package zalign:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Andreas Tille

External Resources:

Similar packages:

parallel local alignment of biological sequences

zAlign is a local sequence aligner, especially intended for use with large biological DNA sequences, with more than 1Mbp (Millions of base pairs). It uses the Smith-Waterman exact algorithm with affine gap cost function to perform this task.

zAlign can be used both in distributed (clusters, for example) or standalone environments. Currently it has been tested on Linux and Sun Solaris, using both the MPICH (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI (http://www.open-mpi.org/) implementations. Ports for other Unix-like environments are highly considered.

Other Packages Related to zalign

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libopenmpi3 (>= 4.0.3)
    high performance message passing library -- shared library
  • dep: libstdc++6 (>= 4.9)
    GNU Standard C++ Library v3

Download zalign

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 47.5 kB279 kB [list of files]
arm64 45.1 kB263 kB [list of files]
armhf 25.7 kB97 kB [list of files]
ppc64el 51.1 kB415 kB [list of files]