[ aramo ]
[ Source: r-bioc-grohmm ]
Package: r-bioc-grohmm (1.28.0-1)
Links for r-bioc-grohmm
Trisquel Resources:
Download Source Package r-bioc-grohmm:
- [r-bioc-grohmm_1.28.0-1.dsc]
- [r-bioc-grohmm_1.28.0.orig.tar.gz]
- [r-bioc-grohmm_1.28.0-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian R Packages Maintainers
- Steffen Moeller
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
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Download r-bioc-grohmm
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 4,333.5 kB | 4500 kB | [list of files] |
| arm64 | 4,331.9 kB | 4492 kB | [list of files] |
| armhf | 4,329.3 kB | 4479 kB | [list of files] |
| ppc64el | 4,340.0 kB | 4576 kB | [list of files] |