[ Source: r-bioc-genomicalignments ]
Package: r-bioc-genomicalignments (1.30.0-1)
Links for r-bioc-genomicalignments
Trisquel Resources:
Download Source Package r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.30.0-1.dsc]
- [r-bioc-genomicalignments_1.30.0.orig.tar.gz]
- [r-bioc-genomicalignments_1.30.0-1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian R Packages Maintainers
- Andreas Tille
External Resources:
- Homepage [bioconductor.org]
Similar packages:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Other Packages Related to r-bioc-genomicalignments
|
|
|
-
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [amd64, armhf]
-
- dep: r-api-4.0
- virtual package provided by r-base-core
-
- dep: r-api-bioc-3.14
- virtual package provided by r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.1.2-1ubuntu1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-biocgenerics (>= 0.37.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-biostrings (>= 2.55.7)
- GNU R string objects representing biological sequences
-
- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicranges (>= 1.41.5)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.23.9)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rsamtools (>= 1.31.2)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- dep: r-bioc-s4vectors (>= 0.27.12)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-summarizedexperiment (>= 1.9.13)
- BioConductor assay container
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-bioc-shortread
- GNU R classes and methods for high-throughput short-read sequencing data
-
- sug: r-cran-runit
- GNU R package providing unit testing framework
Download r-bioc-genomicalignments
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 2,125.9 kB | 2981 kB | [list of files] |
| arm64 | 2,125.6 kB | 2977 kB | [list of files] |
| armhf | 2,122.1 kB | 2948 kB | [list of files] |
| ppc64el | 2,128.1 kB | 3037 kB | [list of files] |