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[ 原始碼: libbio-db-hts-perl  ]

套件: libbio-db-hts-perl (3.01-3build2)

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

其他與 libbio-db-hts-perl 有關的套件

  • 依賴
  • 推薦
  • 建議
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    同時作為一個虛擬套件由這些套件提供: libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.34.0
    本虛擬套件由這些套件提供: perl-base
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

下載 libbio-db-hts-perl

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 159.4 kB458 kB [文件列表]
arm64 157.3 kB448 kB [文件列表]
armhf 154.6 kB396 kB [文件列表]
ppc64el 158.0 kB677 kB [文件列表]