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[ 源代码: spoa  ]

软件包: spoa (3.0.1-1build1)

SIMD partial order alignment tool

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

其他与 spoa 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libspoa3 (>= 3.0.0)
    SIMD partial order alignment library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.11)
    compression library - runtime

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硬件架构 软件包大小 安装后大小 文件
amd64 28.5 kB105 kB [文件列表]