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软件包: r-cran-seurat (3.1.3-1)

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

其他与 r-cran-seurat 有关的软件包

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  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    本虚包由这些包填实: r-base-core
  • dep: r-base-core (>= 3.6.2-2build1)
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ape
    GNU R package for Analyses of Phylogenetics and Evolution
  • dep: r-cran-cluster
    GNU R package for cluster analysis by Rousseeuw et al
  • dep: r-cran-cowplot
    GNU R streamlined plot theme and plot annotations for 'ggplot2'
  • dep: r-cran-fitdistrplus
    support fit of parametric distribution
  • dep: r-cran-future
    R package: A Future API for R
  • dep: r-cran-future.apply
    apply function to elements in parallel using futures
  • dep: r-cran-ggplot2 (>= 3.0.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-ggrepel
    auto-position non-overlapping text labels in plots
  • dep: r-cran-ggridges
    Ridgeline Plots in 'ggplot2'
  • dep: r-cran-httr
    GNU R tools for working with URLs and HTTP
  • dep: r-cran-ica
    Independent Component Analysis
  • dep: r-cran-igraph
    GNU R network analysis and visualization
  • dep: r-cran-irlba
    GNU R fast truncated SVD, PCA and symmetric eigendecomposition
  • dep: r-cran-kernsmooth
    GNU R package for kernel smoothing and density estimation
  • dep: r-cran-leiden (>= 0.3.1)
    GNU R implementation of Leiden clustering algorithm
  • dep: r-cran-lmtest
    GNU R package for diagnostic checking in linear models
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-matrix (>= 1.2-14)
    GNU R package of classes for dense and sparse matrices
  • dep: r-cran-metap
    Meta-Analysis of Significance Values
  • dep: r-cran-pbapply
    GNU R package providing progress bars for vectorized R functions
  • dep: r-cran-plotly
    create interactive web graphics via 'plotly.js' in GNU R
  • dep: r-cran-png
    GNU R package to read and write PNG images
  • dep: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • dep: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • dep: r-cran-rcpp (>= 0.11.0)
    GNU R package for Seamless R and C++ Integration
  • dep: r-cran-rcppannoy
    Rcpp bindings for Annoy (approximate nearest neighbors)
  • dep: r-cran-rcppeigen
    GNU R package for Eigen templated linear algebra
  • dep: r-cran-rcppprogress
    interruptible progress bar for C++ in GNU R packages
  • dep: r-cran-reticulate
    R interface to Python modules, classes, and functions
  • dep: r-cran-rlang
    Functions for Base Types and Core R and 'Tidyverse' Features
  • dep: r-cran-rocr
    GNU R package to prepare and display ROC curves
  • dep: r-cran-rsvd
    Randomized Singular Value Decomposition
  • dep: r-cran-rtsne
    GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
  • dep: r-cran-scales
    Scale functions for visualization
  • dep: r-cran-sctransform (>= 0.2.0)
    Variance Stabilizing Transformations for Single Cell UMI Data
  • dep: r-cran-tsne
    t-distributed stochastic neighbor embedding for R (t-SNE)
  • dep: r-cran-uwot (>= 0.1.5)
    GNU R uniform manifold approximation and projection (UMAP)

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