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[ 源代码: lumpy-sv  ]

软件包: lumpy-sv (0.3.1+dfsg-6)

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

其他与 lumpy-sv 有关的软件包

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  • dep: bamkit
    tools for common BAM file manipulations
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [除 armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgzstream0 (>= 1.5+dfsg)
    provide functionality of zlib C-library in a C++ iostream
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: samblaster
    marks duplicates, extracts discordant/split reads
  • dep: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • rec: sambamba
    tools for working with SAM/BAM data

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 135.6 kB427 kB [文件列表]
arm64 128.3 kB391 kB [文件列表]
armhf 186.4 kB445 kB [文件列表]
ppc64el 141.4 kB547 kB [文件列表]