Paket: malt (0.5.2-2)
malt için bağlantılar
Trisquel Kaynakları:
malt Kaynak Paketini İndir:
Geliştirici:
Original Maintainers:
- Debian Med Packaging Team (Posta Arşivi)
- Andreas Tille
- Pierre Gruet
Dış Kaynaklar:
- Ana Sayfa [github.com]
Benzer paketler:
sequence alignment and analysis tool to process sequencing data
MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics. It is an extension of MEGAN6, the MEGenome Analyzer and is designed to provide the input for MEGAN6, but can also be used independently of MEGAN6.
The core of the program is a sequence alignment engine that aligns DNA or protein sequences to a DNA or protein reference database in either BLASTN (DNA queries and DNA references), BLASTX (DNA queries and protein references) or BLASTP (protein queries and protein references) mode. The engine uses a banded-alignment algorithm with ane gap scores and BLOSUM substitution matrices (in the case of protein alignments). The program can compute both local alignments (Smith-Waterman) or semi-global alignments (in which reads are aligned end-to-end into reference sequences), the latter being more appropriate for aligning metagenomic reads to references.
malt ile İlgili Diğer Paketler
|
|
|
-
- dep: libjloda-java
- Java library of data structures and algorithms for bioinformatics
-
- dep: megan-ce
- interactive tool to explore and analyse microbiome sequencing data
malt indir
Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|
all | 403,7 kB | 429 kB | [dosya listesi] |