Skip to content
Sections
>> Trisquel >> Paketler >> aramo >> libdevel >> libseqlib-dev
[  etiona  ] [  nabia  ] [  aramo  ]
[ Kaynak: libseqlib  ]

Paket: libseqlib-dev (1.2.0+dfsg-8build1)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

libseqlib-dev ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libbwa-dev
    Burrows-Wheeler Aligner source files
  • dep: libfml-dev
    development headers for libfml
  • dep: libhts-dev
    development files for the HTSlib
  • dep: libjsoncpp-dev
    library for reading and writing JSON for C++ (devel files)
  • dep: libseqlib2 (= 1.2.0+dfsg-8build1)
    C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  • dep: libssw-dev
    Development headers and static libraries for libssw
    ayrıca şunun tarafından sağlanan bir sanal paket libssw-dev
  • dep: zlib1g-dev
    compression library - development

libseqlib-dev indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 223,0 kB1177 kB [dosya listesi]
arm64 222,6 kB1162 kB [dosya listesi]
armhf 224,1 kB983 kB [dosya listesi]
ppc64el 258,1 kB1307 kB [dosya listesi]